Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1500

Experiment: acetate; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate; Light intensity 9 uM
1,770,143	+		Rru_A1499	0.17	-0.1
1,770,591	-				-0.1
1,770,591	-				-0.1
1,770,622	+				-0.1
1,770,622	+				-0.2
1,770,622	+				+0.8
1,770,623	-				+0.9
1,770,825	+				-0.1
1,770,825	+				-0.1
1,770,825	+				+0.3
1,770,825	+				-0.1
1,770,825	+				+0.4
1,770,826	-				-0.1
1,770,827	+				+0.1
1,770,828	-				+0.9
1,770,869	-				+1.7
1,770,978	-				-1.1
1,771,023	+				+0.3
1,771,024	-				-0.1
1,771,366	+				-0.1
1,771,366	+				+0.7
1,771,366	+				+0.6
1,771,367	-				-0.1
1,771,367	-				+1.1
1,771,367	-				+0.9
1,771,367	-				-0.1
1,771,367	-				-0.0
1,771,367	-				+0.5
1,771,489	+		Rru_A1500	0.10	-0.1
1,771,491	+		Rru_A1500	0.10	-0.1
1,771,492	-		Rru_A1500	0.10	+0.1
1,771,492	-		Rru_A1500	0.10	+0.5
1,771,503	+		Rru_A1500	0.10	-1.1
1,771,504	-		Rru_A1500	0.10	+0.4
1,771,813	+		Rru_A1500	0.17	-0.1
1,771,813	+		Rru_A1500	0.17	-2.1
1,771,813	+		Rru_A1500	0.17	-2.1
1,771,829	-		Rru_A1500	0.18	+0.5
1,771,829	-		Rru_A1500	0.18	-1.1
1,771,829	-		Rru_A1500	0.18	-0.1
1,772,089	-		Rru_A1500	0.24	-1.1
1,772,089	-		Rru_A1500	0.24	-0.1
1,772,089	-		Rru_A1500	0.24	-0.3
1,772,107	+		Rru_A1500	0.24	-0.2
1,772,108	-		Rru_A1500	0.24	-0.1
1,772,108	-		Rru_A1500	0.24	-0.4
1,772,108	-		Rru_A1500	0.24	+0.1
1,772,120	+		Rru_A1500	0.24	+0.3
1,772,120	+		Rru_A1500	0.24	+0.1
1,772,121	-		Rru_A1500	0.24	+1.1
1,772,121	-		Rru_A1500	0.24	+0.1
1,772,121	-		Rru_A1500	0.24	-0.1
1,772,183	-		Rru_A1500	0.26	-1.1
1,772,301	+		Rru_A1500	0.28	-0.1
1,772,301	+		Rru_A1500	0.28	+0.0
1,772,302	-		Rru_A1500	0.28	+0.9
1,772,302	-		Rru_A1500	0.28	-0.5
1,772,302	-		Rru_A1500	0.28	+0.5
1,772,302	-		Rru_A1500	0.28	+0.2
1,772,380	-		Rru_A1500	0.30	+1.1
1,772,380	-		Rru_A1500	0.30	+0.9
1,772,407	+		Rru_A1500	0.31	+0.8
1,772,407	+		Rru_A1500	0.31	+0.0
1,772,407	+		Rru_A1500	0.31	-0.1
1,772,408	-		Rru_A1500	0.31	-0.1
1,772,408	-		Rru_A1500	0.31	+1.1
1,772,737	+		Rru_A1500	0.38	-0.1
1,772,738	-		Rru_A1500	0.38	-0.1
1,772,738	-		Rru_A1500	0.38	+0.3
1,772,738	-		Rru_A1500	0.38	-0.1
1,772,773	+		Rru_A1500	0.39	-0.1
1,772,773	+		Rru_A1500	0.39	-0.5
1,772,773	+		Rru_A1500	0.39	+0.9
1,772,773	+		Rru_A1500	0.39	+0.0
1,772,773	+		Rru_A1500	0.39	+0.4
1,772,773	+		Rru_A1500	0.39	+0.1
1,772,774	-		Rru_A1500	0.39	+0.3
1,772,774	-		Rru_A1500	0.39	-0.1
1,772,774	-		Rru_A1500	0.39	+1.6
1,772,774	-		Rru_A1500	0.39	-0.0
1,772,774	-		Rru_A1500	0.39	-0.1
1,772,774	-		Rru_A1500	0.39	+0.6
1,773,184	+		Rru_A1500	0.48	-0.1
1,773,325	+		Rru_A1500	0.51	+0.3
1,773,325	+		Rru_A1500	0.51	-0.1
1,773,325	+		Rru_A1500	0.51	+1.1
1,773,325	+		Rru_A1500	0.51	-0.1
1,773,325	+		Rru_A1500	0.51	-0.1
1,773,326	-		Rru_A1500	0.51	+0.4
1,773,326	-		Rru_A1500	0.51	+0.3
1,773,326	-		Rru_A1500	0.51	-1.1
1,773,330	+		Rru_A1500	0.51	+0.4
1,773,551	-		Rru_A1500	0.56	-0.1
1,773,958	+		Rru_A1500	0.66	+0.4
1,773,958	+		Rru_A1500	0.66	-0.4
1,774,075	+		Rru_A1500	0.68	+0.1
1,774,075	+		Rru_A1500	0.68	-0.1
1,774,076	-		Rru_A1500	0.68	-0.1
1,774,591	+		Rru_A1500	0.80	+0.7
1,774,592	-		Rru_A1500	0.80	+0.1
1,774,592	-		Rru_A1500	0.80	+0.7
1,774,593	+		Rru_A1500	0.80	+0.6
1,774,593	+		Rru_A1500	0.80	+1.2
1,774,593	+		Rru_A1500	0.80	-0.1
1,774,593	+		Rru_A1500	0.80	-0.1
1,774,594	-		Rru_A1500	0.80	-1.1
1,774,594	-		Rru_A1500	0.80	+0.7
1,774,594	-		Rru_A1500	0.80	+0.7
1,774,740	+		Rru_A1500	0.83	-2.1
1,774,740	+		Rru_A1500	0.83	-0.1
1,774,741	-		Rru_A1500	0.83	+0.7
1,774,870	+		Rru_A1500	0.86	-0.1
1,774,871	-		Rru_A1500	0.86	-0.1
1,774,948	+		Rru_A1500	0.88	-0.1
1,774,949	-		Rru_A1500	0.88	-0.1
1,774,949	-		Rru_A1500	0.88	-0.1
1,775,020	+		Rru_A1500	0.89	+0.3
1,775,021	-		Rru_A1500	0.89	+0.5
1,775,021	-		Rru_A1500	0.89	+0.6
1,775,105	-				+0.2
1,775,105	-				-0.1
1,775,106	+				-0.5
1,775,106	+				+0.3
1,775,107	-				-1.4
1,775,735	-				+0.1
1,775,772	-				+0.1
1,775,824	+				+0.7
1,775,897	+				-0.1
1,775,898	-				-0.1
1,776,125	+		Rru_A1501	0.32	-0.1
1,776,126	-		Rru_A1501	0.33	+0.2
1,776,126	-		Rru_A1501	0.33	+0.7
1,776,126	-		Rru_A1501	0.33	+0.6
1,776,203	+		Rru_A1501	0.57	+0.9
1,776,215	+		Rru_A1501	0.61	+0.8
1,776,215	+		Rru_A1501	0.61	+0.7
1,776,216	-		Rru_A1501	0.61	+0.3
1,776,335	+				+1.5
1,776,336	-				-0.1
1,776,389	+				-0.1
1,776,389	+				-0.1
1,776,389	+				+2.1
1,776,390	-				-0.8
1,776,395	-				+0.2
1,776,407	+				-0.1
1,776,407	+				-0.1
1,776,407	+				-0.1
1,776,407	+				+1.1
1,776,408	-				-0.1
1,776,408	-				+0.8
1,776,408	-				-0.1
1,776,426	+				-1.1
1,776,426	+				-0.1