Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1495

Experiment: acetate; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate; Light intensity 9 uM
1,765,163	+		Rru_A1494	0.56	-0.1
1,765,279	+		Rru_A1494	0.65	-0.5
1,765,290	-		Rru_A1494	0.65	+1.1
1,765,403	+		Rru_A1494	0.74	-0.7
1,765,403	+		Rru_A1494	0.74	-0.1
1,765,403	+		Rru_A1494	0.74	-0.0
1,765,403	+		Rru_A1494	0.74	-0.1
1,765,403	+		Rru_A1494	0.74	-0.1
1,765,403	+		Rru_A1494	0.74	-0.1
1,765,413	+		Rru_A1494	0.74	-0.4
1,765,535	+		Rru_A1494	0.83	-0.1
1,765,535	+		Rru_A1494	0.83	-0.4
1,765,535	+		Rru_A1494	0.83	-0.1
1,765,535	+		Rru_A1494	0.83	-0.3
1,765,535	+		Rru_A1494	0.83	-0.1
1,765,786	+				+0.1
1,765,786	+				+0.2
1,765,787	-				+0.9
1,765,787	-				+1.0
1,765,869	+				-1.1
1,765,869	+				-0.1
1,765,960	+		Rru_A1495	0.15	+0.8
1,765,960	+		Rru_A1495	0.15	+1.0
1,765,981	+		Rru_A1495	0.16	-0.1
1,765,981	+		Rru_A1495	0.16	+0.9
1,765,981	+		Rru_A1495	0.16	+0.1
1,765,981	+		Rru_A1495	0.16	+0.6
1,765,981	+		Rru_A1495	0.16	-0.1
1,765,981	+		Rru_A1495	0.16	-0.1
1,765,981	+		Rru_A1495	0.16	+0.3
1,765,982	-		Rru_A1495	0.16	+1.0
1,765,982	-		Rru_A1495	0.16	-0.1
1,765,982	-		Rru_A1495	0.16	+1.0
1,765,982	-		Rru_A1495	0.16	-0.1
1,766,113	+		Rru_A1495	0.26	-0.1
1,766,113	+		Rru_A1495	0.26	-0.8
1,766,114	-		Rru_A1495	0.26	-1.7
1,766,114	-		Rru_A1495	0.26	+1.2
1,766,114	-		Rru_A1495	0.26	-0.1
1,766,114	-		Rru_A1495	0.26	+1.2
1,766,115	+		Rru_A1495	0.26	-0.1
1,766,115	+		Rru_A1495	0.26	-0.1
1,766,115	+		Rru_A1495	0.26	-0.0
1,766,116	-		Rru_A1495	0.26	+0.3
1,766,116	-		Rru_A1495	0.26	-0.1
1,766,116	-		Rru_A1495	0.26	+0.9
1,766,116	-		Rru_A1495	0.26	+1.8
1,766,123	+		Rru_A1495	0.27	+0.5
1,766,123	+		Rru_A1495	0.27	+1.1
1,766,124	-		Rru_A1495	0.27	-0.1
1,766,124	-		Rru_A1495	0.27	+0.6
1,766,215	+		Rru_A1495	0.34	-0.3
1,766,220	+		Rru_A1495	0.34	-0.1
1,766,220	+		Rru_A1495	0.34	+1.4
1,766,220	+		Rru_A1495	0.34	+1.2
1,766,281	+		Rru_A1495	0.39	-0.1
1,766,458	+		Rru_A1495	0.52	-0.1
1,766,459	-		Rru_A1495	0.52	+0.8
1,766,611	+		Rru_A1495	0.64	-0.1
1,766,611	+		Rru_A1495	0.64	-0.4
1,766,611	+		Rru_A1495	0.64	+0.1
1,766,611	+		Rru_A1495	0.64	-0.7
1,766,611	+		Rru_A1495	0.64	-0.1
1,766,611	+		Rru_A1495	0.64	+0.5
1,766,612	-		Rru_A1495	0.64	+1.0
1,766,612	-		Rru_A1495	0.64	-0.1
1,766,612	-		Rru_A1495	0.64	+0.8
1,766,612	-		Rru_A1495	0.64	+1.6
1,766,612	-		Rru_A1495	0.64	-0.1
1,766,612	-		Rru_A1495	0.64	+1.3
1,766,612	-		Rru_A1495	0.64	+0.9
1,766,617	+		Rru_A1495	0.64	-0.1
1,766,619	+		Rru_A1495	0.64	+0.5
1,766,619	+		Rru_A1495	0.64	-0.1
1,766,620	-		Rru_A1495	0.64	-0.1
1,766,620	-		Rru_A1495	0.64	+1.1
1,766,674	-		Rru_A1495	0.69	+1.0
1,766,691	+		Rru_A1495	0.70	-0.1
1,766,692	-		Rru_A1495	0.70	+0.9
1,766,798	-		Rru_A1495	0.78	+2.0
1,766,839	+		Rru_A1495	0.81	+0.6
1,766,839	+		Rru_A1495	0.81	-0.2
1,767,115	-				+2.0
1,767,327	+		Rru_A1496	0.24	-0.1
1,767,327	+		Rru_A1496	0.24	+1.9
1,767,327	+		Rru_A1496	0.24	+1.8
1,767,327	+		Rru_A1496	0.24	+1.3
1,767,327	+		Rru_A1496	0.24	+1.4
1,767,327	+		Rru_A1496	0.24	+1.1
1,767,327	+		Rru_A1496	0.24	+0.9
1,767,328	-		Rru_A1496	0.24	-0.1
1,767,328	-		Rru_A1496	0.24	+0.7
1,767,329	+		Rru_A1496	0.24	+0.9
1,767,330	-		Rru_A1496	0.24	+0.9
1,767,342	+		Rru_A1496	0.25	+1.1
1,767,342	+		Rru_A1496	0.25	-0.1
1,767,342	+		Rru_A1496	0.25	+1.4
1,767,342	+		Rru_A1496	0.25	+1.4
1,767,342	+		Rru_A1496	0.25	+1.9
1,767,342	+		Rru_A1496	0.25	+1.0
1,767,343	-		Rru_A1496	0.25	+0.7
1,767,343	-		Rru_A1496	0.25	-0.1
1,767,343	-		Rru_A1496	0.25	+1.2
1,767,346	-		Rru_A1496	0.25	+1.2
1,767,346	-		Rru_A1496	0.25	-0.1
1,767,506	-		Rru_A1496	0.41	+1.4
1,768,068	+				+1.3
1,768,069	-				+1.0