Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1484

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1483 and Rru_A1484 are separated by 4 nucleotidesRru_A1484 and Rru_A1485 overlap by 4 nucleotides Rru_A1483: Rru_A1483 - Asparagine synthase, glutamine-hydrolyzing (NCBI), at 1,749,861 to 1,751,711 _A1483 Rru_A1484: Rru_A1484 - Glycosyl transferase WecB/TagA/CpsF (NCBI), at 1,751,716 to 1,753,440 _A1484 Rru_A1485: Rru_A1485 - Parallel beta-helix repeat (NCBI), at 1,753,437 to 1,754,894 _A1485 Position (kb) 1751 1752 1753 1754Strain fitness (log2 ratio) -1 0 1 2at 1750.834 kb on + strand, within Rru_A1483at 1750.834 kb on + strand, within Rru_A1483at 1750.834 kb on + strand, within Rru_A1483at 1750.834 kb on + strand, within Rru_A1483at 1750.834 kb on + strand, within Rru_A1483at 1750.834 kb on + strand, within Rru_A1483at 1750.834 kb on + strand, within Rru_A1483at 1750.834 kb on + strand, within Rru_A1483at 1750.834 kb on + strand, within Rru_A1483at 1750.835 kb on - strand, within Rru_A1483at 1750.835 kb on - strand, within Rru_A1483at 1750.835 kb on - strand, within Rru_A1483at 1750.835 kb on - strand, within Rru_A1483at 1750.835 kb on - strand, within Rru_A1483at 1750.835 kb on - strand, within Rru_A1483at 1750.835 kb on - strand, within Rru_A1483at 1751.266 kb on + strand, within Rru_A1483at 1751.266 kb on + strand, within Rru_A1483at 1751.266 kb on + strand, within Rru_A1483at 1751.266 kb on + strand, within Rru_A1483at 1751.266 kb on + strand, within Rru_A1483at 1751.267 kb on - strand, within Rru_A1483at 1751.467 kb on + strand, within Rru_A1483at 1751.467 kb on + strand, within Rru_A1483at 1751.467 kb on + strand, within Rru_A1483at 1751.467 kb on + strand, within Rru_A1483at 1751.467 kb on + strand, within Rru_A1483at 1751.468 kb on - strand, within Rru_A1483at 1751.468 kb on - strand, within Rru_A1483at 1751.468 kb on - strand, within Rru_A1483at 1751.468 kb on - strand, within Rru_A1483at 1751.468 kb on - strand, within Rru_A1483at 1751.468 kb on - strand, within Rru_A1483at 1751.468 kb on - strand, within Rru_A1483at 1751.468 kb on - strand, within Rru_A1483at 1751.468 kb on - strand, within Rru_A1483at 1751.468 kb on - strand, within Rru_A1483at 1751.471 kb on + strand, within Rru_A1483at 1751.471 kb on + strand, within Rru_A1483at 1751.471 kb on + strand, within Rru_A1483at 1751.471 kb on + strand, within Rru_A1483at 1751.471 kb on + strand, within Rru_A1483at 1751.471 kb on + strand, within Rru_A1483at 1751.472 kb on - strand, within Rru_A1483at 1751.472 kb on - strand, within Rru_A1483at 1751.472 kb on - strand, within Rru_A1483at 1751.472 kb on - strand, within Rru_A1483at 1751.472 kb on - strand, within Rru_A1483at 1751.473 kb on + strand, within Rru_A1483at 1751.474 kb on - strand, within Rru_A1483at 1751.474 kb on - strand, within Rru_A1483at 1751.717 kb on + strandat 1751.717 kb on + strandat 1751.717 kb on + strandat 1751.718 kb on - strandat 1751.718 kb on - strandat 1751.718 kb on - strandat 1751.718 kb on - strandat 1751.718 kb on - strandat 1751.930 kb on + strand, within Rru_A1484at 1751.930 kb on + strand, within Rru_A1484at 1752.065 kb on + strand, within Rru_A1484at 1752.065 kb on + strand, within Rru_A1484at 1752.065 kb on + strand, within Rru_A1484at 1752.066 kb on - strand, within Rru_A1484at 1752.160 kb on - strand, within Rru_A1484at 1752.160 kb on - strand, within Rru_A1484at 1752.161 kb on + strand, within Rru_A1484at 1752.161 kb on + strand, within Rru_A1484at 1752.161 kb on + strand, within Rru_A1484at 1752.161 kb on + strand, within Rru_A1484at 1752.162 kb on - strand, within Rru_A1484at 1752.162 kb on - strand, within Rru_A1484at 1752.162 kb on - strand, within Rru_A1484at 1752.294 kb on + strand, within Rru_A1484at 1752.295 kb on - strand, within Rru_A1484at 1752.363 kb on + strand, within Rru_A1484at 1752.376 kb on + strand, within Rru_A1484at 1752.376 kb on + strand, within Rru_A1484at 1752.376 kb on + strand, within Rru_A1484at 1752.376 kb on + strand, within Rru_A1484at 1752.377 kb on - strand, within Rru_A1484at 1752.377 kb on - strand, within Rru_A1484at 1752.785 kb on + strand, within Rru_A1484at 1752.785 kb on + strand, within Rru_A1484at 1752.892 kb on + strand, within Rru_A1484at 1752.892 kb on + strand, within Rru_A1484at 1752.892 kb on + strand, within Rru_A1484at 1752.892 kb on + strand, within Rru_A1484at 1752.892 kb on + strand, within Rru_A1484at 1752.893 kb on - strand, within Rru_A1484at 1753.097 kb on + strand, within Rru_A1484at 1753.098 kb on - strand, within Rru_A1484at 1753.098 kb on - strand, within Rru_A1484at 1753.248 kb on - strand, within Rru_A1484at 1753.259 kb on + strand, within Rru_A1484at 1753.259 kb on + strand, within Rru_A1484at 1753.259 kb on + strand, within Rru_A1484at 1753.260 kb on - strand, within Rru_A1484at 1753.260 kb on - strand, within Rru_A1484at 1753.260 kb on - strand, within Rru_A1484at 1753.557 kb on - strandat 1753.968 kb on - strand, within Rru_A1485at 1754.142 kb on - strand, within Rru_A1485at 1754.182 kb on + strand, within Rru_A1485at 1754.183 kb on - strand, within Rru_A1485at 1754.183 kb on - strand, within Rru_A1485at 1754.183 kb on - strand, within Rru_A1485at 1754.183 kb on - strand, within Rru_A1485at 1754.216 kb on + strand, within Rru_A1485at 1754.283 kb on + strand, within Rru_A1485at 1754.284 kb on - strand, within Rru_A1485at 1754.288 kb on - strand, within Rru_A1485at 1754.288 kb on - strand, within Rru_A1485at 1754.288 kb on - strand, within Rru_A1485

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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1,750,834 + Rru_A1483 0.53 -0.1
1,750,834 + Rru_A1483 0.53 -0.1
1,750,834 + Rru_A1483 0.53 +0.3
1,750,834 + Rru_A1483 0.53 -0.1
1,750,834 + Rru_A1483 0.53 -0.1
1,750,834 + Rru_A1483 0.53 -0.1
1,750,834 + Rru_A1483 0.53 +0.5
1,750,834 + Rru_A1483 0.53 -0.1
1,750,834 + Rru_A1483 0.53 +0.6
1,750,835 - Rru_A1483 0.53 +1.3
1,750,835 - Rru_A1483 0.53 +0.5
1,750,835 - Rru_A1483 0.53 -0.1
1,750,835 - Rru_A1483 0.53 -0.1
1,750,835 - Rru_A1483 0.53 -0.1
1,750,835 - Rru_A1483 0.53 -0.1
1,750,835 - Rru_A1483 0.53 -0.1
1,751,266 + Rru_A1483 0.76 +0.4
1,751,266 + Rru_A1483 0.76 +0.6
1,751,266 + Rru_A1483 0.76 -0.1
1,751,266 + Rru_A1483 0.76 -0.1
1,751,266 + Rru_A1483 0.76 +0.6
1,751,267 - Rru_A1483 0.76 +0.9
1,751,467 + Rru_A1483 0.87 -0.1
1,751,467 + Rru_A1483 0.87 +0.6
1,751,467 + Rru_A1483 0.87 -0.1
1,751,467 + Rru_A1483 0.87 +0.5
1,751,467 + Rru_A1483 0.87 +0.5
1,751,468 - Rru_A1483 0.87 -0.1
1,751,468 - Rru_A1483 0.87 -0.4
1,751,468 - Rru_A1483 0.87 +1.8
1,751,468 - Rru_A1483 0.87 +0.4
1,751,468 - Rru_A1483 0.87 -0.1
1,751,468 - Rru_A1483 0.87 +1.1
1,751,468 - Rru_A1483 0.87 -0.1
1,751,468 - Rru_A1483 0.87 +0.2
1,751,468 - Rru_A1483 0.87 -0.1
1,751,468 - Rru_A1483 0.87 -0.4
1,751,471 + Rru_A1483 0.87 -0.1
1,751,471 + Rru_A1483 0.87 +0.3
1,751,471 + Rru_A1483 0.87 -0.1
1,751,471 + Rru_A1483 0.87 -0.1
1,751,471 + Rru_A1483 0.87 -0.1
1,751,471 + Rru_A1483 0.87 +0.1
1,751,472 - Rru_A1483 0.87 -0.8
1,751,472 - Rru_A1483 0.87 -0.1
1,751,472 - Rru_A1483 0.87 +0.1
1,751,472 - Rru_A1483 0.87 +0.8
1,751,472 - Rru_A1483 0.87 -0.1
1,751,473 + Rru_A1483 0.87 +1.1
1,751,474 - Rru_A1483 0.87 -0.1
1,751,474 - Rru_A1483 0.87 +0.4
1,751,717 + -0.1
1,751,717 + -0.1
1,751,717 + -0.4
1,751,718 - -0.1
1,751,718 - -0.1
1,751,718 - -0.1
1,751,718 - -0.1
1,751,718 - -1.7
1,751,930 + Rru_A1484 0.12 +0.7
1,751,930 + Rru_A1484 0.12 +0.9
1,752,065 + Rru_A1484 0.20 +0.7
1,752,065 + Rru_A1484 0.20 +1.4
1,752,065 + Rru_A1484 0.20 -0.1
1,752,066 - Rru_A1484 0.20 -0.1
1,752,160 - Rru_A1484 0.26 -0.1
1,752,160 - Rru_A1484 0.26 +0.6
1,752,161 + Rru_A1484 0.26 +1.0
1,752,161 + Rru_A1484 0.26 +0.4
1,752,161 + Rru_A1484 0.26 -0.4
1,752,161 + Rru_A1484 0.26 -0.1
1,752,162 - Rru_A1484 0.26 -1.7
1,752,162 - Rru_A1484 0.26 -0.1
1,752,162 - Rru_A1484 0.26 -0.1
1,752,294 + Rru_A1484 0.34 -0.1
1,752,295 - Rru_A1484 0.34 -0.1
1,752,363 + Rru_A1484 0.38 -0.1
1,752,376 + Rru_A1484 0.38 +1.3
1,752,376 + Rru_A1484 0.38 +0.9
1,752,376 + Rru_A1484 0.38 +0.4
1,752,376 + Rru_A1484 0.38 +1.5
1,752,377 - Rru_A1484 0.38 +0.8
1,752,377 - Rru_A1484 0.38 +0.9
1,752,785 + Rru_A1484 0.62 -0.1
1,752,785 + Rru_A1484 0.62 +0.9
1,752,892 + Rru_A1484 0.68 +2.2
1,752,892 + Rru_A1484 0.68 +0.4
1,752,892 + Rru_A1484 0.68 +0.5
1,752,892 + Rru_A1484 0.68 +0.5
1,752,892 + Rru_A1484 0.68 +0.4
1,752,893 - Rru_A1484 0.68 -0.1
1,753,097 + Rru_A1484 0.80 -0.1
1,753,098 - Rru_A1484 0.80 -0.1
1,753,098 - Rru_A1484 0.80 -0.1
1,753,248 - Rru_A1484 0.89 +0.7
1,753,259 + Rru_A1484 0.89 -0.1
1,753,259 + Rru_A1484 0.89 -0.1
1,753,259 + Rru_A1484 0.89 +1.0
1,753,260 - Rru_A1484 0.90 +0.7
1,753,260 - Rru_A1484 0.90 -0.1
1,753,260 - Rru_A1484 0.90 +0.7
1,753,557 - +0.2
1,753,968 - Rru_A1485 0.36 +0.0
1,754,142 - Rru_A1485 0.48 -0.1
1,754,182 + Rru_A1485 0.51 -0.1
1,754,183 - Rru_A1485 0.51 -1.7
1,754,183 - Rru_A1485 0.51 -0.1
1,754,183 - Rru_A1485 0.51 -0.1
1,754,183 - Rru_A1485 0.51 -0.1
1,754,216 + Rru_A1485 0.53 +0.9
1,754,283 + Rru_A1485 0.58 +1.0
1,754,284 - Rru_A1485 0.58 +0.8
1,754,288 - Rru_A1485 0.58 -0.1
1,754,288 - Rru_A1485 0.58 +0.0
1,754,288 - Rru_A1485 0.58 -0.1

Or see this region's nucleotide sequence