Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1480 and Rru_A1481 overlap by 4 nucleotides Rru_A1481 and Rru_A1482 overlap by 4 nucleotides
Rru_A1480: Rru_A1480 - hypothetical protein (NCBI), at 1,745,923 to 1,747,107
_A1480
Rru_A1481: Rru_A1481 - hypothetical protein (NCBI), at 1,747,104 to 1,748,486
_A1481
Rru_A1482: Rru_A1482 - Undecaprenyl-phosphategalactosephosphotransferase (NCBI), at 1,748,483 to 1,749,841
_A1482
Position (kb) 1747
1748
1749 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1746.205 kb on - strand, within Rru_A1480 at 1746.205 kb on - strand, within Rru_A1480 at 1746.618 kb on + strand, within Rru_A1480 at 1746.618 kb on + strand, within Rru_A1480 at 1746.618 kb on + strand, within Rru_A1480 at 1746.618 kb on + strand, within Rru_A1480 at 1746.618 kb on + strand, within Rru_A1480 at 1746.618 kb on + strand, within Rru_A1480 at 1746.619 kb on - strand, within Rru_A1480 at 1746.927 kb on + strand, within Rru_A1480 at 1746.935 kb on - strand, within Rru_A1480 at 1746.935 kb on - strand, within Rru_A1480 at 1747.112 kb on + strand at 1747.112 kb on + strand at 1747.112 kb on + strand at 1747.113 kb on - strand at 1747.113 kb on - strand at 1747.248 kb on + strand, within Rru_A1481 at 1747.249 kb on - strand, within Rru_A1481 at 1747.249 kb on - strand, within Rru_A1481 at 1747.327 kb on + strand, within Rru_A1481 at 1747.444 kb on - strand, within Rru_A1481 at 1747.444 kb on - strand, within Rru_A1481 at 1747.444 kb on - strand, within Rru_A1481 at 1747.444 kb on - strand, within Rru_A1481 at 1747.530 kb on + strand, within Rru_A1481 at 1747.530 kb on + strand, within Rru_A1481 at 1747.530 kb on + strand, within Rru_A1481 at 1747.530 kb on + strand, within Rru_A1481 at 1747.530 kb on + strand, within Rru_A1481 at 1747.530 kb on + strand, within Rru_A1481 at 1747.531 kb on - strand, within Rru_A1481 at 1747.531 kb on - strand, within Rru_A1481 at 1747.569 kb on + strand, within Rru_A1481 at 1748.639 kb on + strand, within Rru_A1482 at 1748.639 kb on + strand, within Rru_A1482 at 1748.639 kb on + strand, within Rru_A1482 at 1748.640 kb on - strand, within Rru_A1482 at 1748.640 kb on - strand, within Rru_A1482 at 1748.702 kb on + strand, within Rru_A1482 at 1748.702 kb on + strand, within Rru_A1482 at 1748.795 kb on + strand, within Rru_A1482 at 1748.937 kb on + strand, within Rru_A1482 at 1748.938 kb on - strand, within Rru_A1482 at 1749.239 kb on + strand, within Rru_A1482 at 1749.240 kb on - strand, within Rru_A1482 at 1749.240 kb on - strand, within Rru_A1482
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 1,746,205 - Rru_A1480 0.24 -0.1 1,746,205 - Rru_A1480 0.24 -0.1 1,746,618 + Rru_A1480 0.59 -0.1 1,746,618 + Rru_A1480 0.59 -0.1 1,746,618 + Rru_A1480 0.59 +0.6 1,746,618 + Rru_A1480 0.59 +0.2 1,746,618 + Rru_A1480 0.59 -0.1 1,746,618 + Rru_A1480 0.59 -0.1 1,746,619 - Rru_A1480 0.59 +0.2 1,746,927 + Rru_A1480 0.85 -0.1 1,746,935 - Rru_A1480 0.85 -0.1 1,746,935 - Rru_A1480 0.85 +0.3 1,747,112 + -2.9 1,747,112 + -0.1 1,747,112 + +1.3 1,747,113 - +0.5 1,747,113 - +0.6 1,747,248 + Rru_A1481 0.10 -0.1 1,747,249 - Rru_A1481 0.10 -2.1 1,747,249 - Rru_A1481 0.10 -0.1 1,747,327 + Rru_A1481 0.16 +1.5 1,747,444 - Rru_A1481 0.25 -0.1 1,747,444 - Rru_A1481 0.25 +1.0 1,747,444 - Rru_A1481 0.25 -0.1 1,747,444 - Rru_A1481 0.25 +0.1 1,747,530 + Rru_A1481 0.31 +1.9 1,747,530 + Rru_A1481 0.31 -0.1 1,747,530 + Rru_A1481 0.31 -0.1 1,747,530 + Rru_A1481 0.31 -0.1 1,747,530 + Rru_A1481 0.31 -0.1 1,747,530 + Rru_A1481 0.31 +0.9 1,747,531 - Rru_A1481 0.31 +0.6 1,747,531 - Rru_A1481 0.31 +1.4 1,747,569 + Rru_A1481 0.34 +0.9 1,748,639 + Rru_A1482 0.11 +0.2 1,748,639 + Rru_A1482 0.11 -0.1 1,748,639 + Rru_A1482 0.11 -0.1 1,748,640 - Rru_A1482 0.12 -0.4 1,748,640 - Rru_A1482 0.12 +0.4 1,748,702 + Rru_A1482 0.16 +0.1 1,748,702 + Rru_A1482 0.16 +0.5 1,748,795 + Rru_A1482 0.23 +0.1 1,748,937 + Rru_A1482 0.33 -0.1 1,748,938 - Rru_A1482 0.33 -0.1 1,749,239 + Rru_A1482 0.56 -0.1 1,749,240 - Rru_A1482 0.56 -0.1 1,749,240 - Rru_A1482 0.56 +1.0
Or see this region's nucleotide sequence