Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1458

Experiment: acetate; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate; Light intensity 9 uM
1,720,660	+		Rru_A1457	0.28	+0.4
1,720,660	+		Rru_A1457	0.28	+0.9
1,720,660	+		Rru_A1457	0.28	+1.5
1,720,661	-		Rru_A1457	0.28	-0.1
1,720,663	+		Rru_A1457	0.28	-0.4
1,720,663	+		Rru_A1457	0.28	+0.3
1,720,664	-		Rru_A1457	0.28	-0.1
1,720,664	-		Rru_A1457	0.28	-0.1
1,720,664	-		Rru_A1457	0.28	-0.1
1,720,664	-		Rru_A1457	0.28	+0.8
1,720,664	-		Rru_A1457	0.28	+0.7
1,720,721	-		Rru_A1457	0.34	-0.1
1,720,721	-		Rru_A1457	0.34	+0.6
1,720,800	+		Rru_A1457	0.41	+0.1
1,720,800	+		Rru_A1457	0.41	-0.1
1,720,801	-		Rru_A1457	0.42	+0.3
1,721,122	+		Rru_A1457	0.73	-0.1
1,721,123	-		Rru_A1457	0.73	-0.1
1,721,123	-		Rru_A1457	0.73	+0.5
1,721,423	+				+0.2
1,721,423	+				-0.8
1,721,424	-				-0.1
1,721,424	-				-0.4
1,721,497	-				+0.2
1,721,583	+				+0.4
1,721,584	-				+0.4
1,721,584	-				+3.0
1,721,677	-		Rru_A1458	0.13	+0.2
1,721,778	+		Rru_A1458	0.18	-0.1
1,721,778	+		Rru_A1458	0.18	-0.1
1,721,779	-		Rru_A1458	0.18	-0.1
1,721,950	+		Rru_A1458	0.26	-0.1
1,722,027	+		Rru_A1458	0.30	-0.1
1,722,027	+		Rru_A1458	0.30	-0.7
1,722,027	+		Rru_A1458	0.30	-0.1
1,722,028	-		Rru_A1458	0.30	-0.1
1,722,028	-		Rru_A1458	0.30	+0.1
1,722,039	+		Rru_A1458	0.30	-0.6
1,722,040	-		Rru_A1458	0.30	+1.0
1,722,072	+		Rru_A1458	0.32	-0.1
1,722,072	+		Rru_A1458	0.32	+0.8
1,722,073	-		Rru_A1458	0.32	-0.1
1,722,073	-		Rru_A1458	0.32	+0.5
1,722,076	+		Rru_A1458	0.32	+0.4
1,722,076	+		Rru_A1458	0.32	+0.5
1,722,077	-		Rru_A1458	0.32	-1.1
1,722,078	+		Rru_A1458	0.32	+0.3
1,722,114	+		Rru_A1458	0.34	+0.1
1,722,115	-		Rru_A1458	0.34	-0.1
1,722,115	-		Rru_A1458	0.34	-0.1
1,722,116	+		Rru_A1458	0.34	-0.1
1,722,116	+		Rru_A1458	0.34	-0.2
1,722,116	+		Rru_A1458	0.34	-0.1
1,722,116	+		Rru_A1458	0.34	-1.1
1,722,116	+		Rru_A1458	0.34	-0.1
1,722,117	-		Rru_A1458	0.34	+0.3
1,722,372	+		Rru_A1458	0.46	+0.3
1,722,373	-		Rru_A1458	0.46	-0.1
1,722,373	-		Rru_A1458	0.46	-0.1
1,722,373	-		Rru_A1458	0.46	-0.1
1,722,373	-		Rru_A1458	0.46	+0.1
1,722,649	+		Rru_A1458	0.60	+0.9
1,722,654	+		Rru_A1458	0.60	+0.4
1,722,654	+		Rru_A1458	0.60	+1.3
1,722,654	+		Rru_A1458	0.60	+0.4
1,722,654	+		Rru_A1458	0.60	+0.4
1,722,654	+		Rru_A1458	0.60	-0.1
1,722,655	-		Rru_A1458	0.60	+0.0
1,722,655	-		Rru_A1458	0.60	+0.1
1,722,655	-		Rru_A1458	0.60	+0.1
1,722,655	-		Rru_A1458	0.60	+0.9
1,722,655	-		Rru_A1458	0.60	-0.1
1,722,666	+		Rru_A1458	0.60	+0.1
1,722,666	+		Rru_A1458	0.60	+0.4
1,722,667	-		Rru_A1458	0.60	+0.8
1,722,667	-		Rru_A1458	0.60	-0.1
1,722,682	-		Rru_A1458	0.61	-0.1
1,722,682	-		Rru_A1458	0.61	-1.3
1,722,696	+		Rru_A1458	0.62	+0.4
1,722,696	+		Rru_A1458	0.62	-0.1
1,722,696	+		Rru_A1458	0.62	+0.1
1,722,697	-		Rru_A1458	0.62	-0.1
1,722,933	+		Rru_A1458	0.73	+0.0
1,722,933	+		Rru_A1458	0.73	+0.3
1,722,933	+		Rru_A1458	0.73	-0.1
1,722,934	-		Rru_A1458	0.73	+0.4
1,722,934	-		Rru_A1458	0.73	-2.4
1,722,934	-		Rru_A1458	0.73	-0.2
1,722,934	-		Rru_A1458	0.73	+0.2
1,723,175	+		Rru_A1458	0.85	+0.7
1,723,175	+		Rru_A1458	0.85	+0.3
1,723,175	+		Rru_A1458	0.85	+0.1
1,723,176	-		Rru_A1458	0.85	+1.6
1,723,176	-		Rru_A1458	0.85	+0.9
1,723,176	-		Rru_A1458	0.85	-1.1
1,723,524	+				-0.3
1,723,524	+				-0.1
1,723,524	+				+0.9
1,723,525	-				+0.9
1,724,048	-		Rru_A1459	0.43	-1.1
1,724,081	+		Rru_A1459	0.46	+0.1
1,724,081	+		Rru_A1459	0.46	+0.2
1,724,082	-		Rru_A1459	0.46	-0.1
1,724,082	-		Rru_A1459	0.46	-0.1
1,724,370	-		Rru_A1459	0.68	+0.5
1,724,389	-		Rru_A1459	0.70	+2.1
1,724,389	-		Rru_A1459	0.70	-0.1
1,724,389	-		Rru_A1459	0.70	+1.4
1,724,389	-		Rru_A1459	0.70	-1.1