Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1425

Experiment: acetate; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate; Light intensity 9 uM
1,683,338	+		Rru_A1423	0.50	-0.9
1,683,357	+		Rru_A1423	0.53	+0.7
1,683,404	+		Rru_A1423	0.63	-0.1
1,683,405	-		Rru_A1423	0.63	+0.3
1,683,434	+		Rru_A1423	0.69	+0.2
1,683,435	-		Rru_A1423	0.69	+0.3
1,683,581	-				-1.1
1,683,581	-				-1.1
1,683,812	-		Rru_A1424	0.44	+0.6
1,683,812	-		Rru_A1424	0.44	-0.4
1,683,937	+		Rru_A1424	0.68	-0.5
1,683,938	-		Rru_A1424	0.68	-0.6
1,684,110	+				+1.2
1,684,110	+				+0.5
1,684,110	+				+0.2
1,684,110	+				-0.3
1,684,110	+				-0.1
1,684,111	-				+0.3
1,684,111	-				+0.4
1,684,111	-				-0.1
1,684,111	-				-0.1
1,684,111	-				-0.1
1,684,111	-				-0.5
1,684,111	-				-0.1
1,684,112	+				+0.4
1,684,112	+				+0.2
1,684,112	+				-0.1
1,684,112	+				-1.1
1,684,113	-				-1.1
1,684,113	-				-0.1
1,684,237	-		Rru_A1425	0.13	+0.1
1,684,261	-		Rru_A1425	0.15	+0.9
1,684,268	+		Rru_A1425	0.15	-0.1
1,684,268	+		Rru_A1425	0.15	+0.1
1,684,323	+		Rru_A1425	0.20	+0.1
1,684,324	-		Rru_A1425	0.21	+0.3
1,684,421	+		Rru_A1425	0.29	-0.1
1,684,421	+		Rru_A1425	0.29	-1.1
1,684,421	+		Rru_A1425	0.29	+0.0
1,684,421	+		Rru_A1425	0.29	-1.1
1,684,422	-		Rru_A1425	0.30	-1.1
1,684,422	-		Rru_A1425	0.30	-0.1
1,684,422	-		Rru_A1425	0.30	+0.6
1,684,422	-		Rru_A1425	0.30	-0.3
1,684,448	+		Rru_A1425	0.32	-0.1
1,684,448	+		Rru_A1425	0.32	+1.0
1,684,573	-		Rru_A1425	0.43	-0.1
1,684,573	-		Rru_A1425	0.43	+0.6
1,684,573	-		Rru_A1425	0.43	+0.4
1,684,599	+		Rru_A1425	0.46	+0.1
1,684,600	-		Rru_A1425	0.46	+0.6
1,684,660	-		Rru_A1425	0.51	-0.0
1,684,660	-		Rru_A1425	0.51	+0.4
1,684,731	+		Rru_A1425	0.58	-0.1
1,684,731	+		Rru_A1425	0.58	+0.6
1,684,773	+		Rru_A1425	0.62	-0.1
1,684,773	+		Rru_A1425	0.62	+0.1
1,684,773	+		Rru_A1425	0.62	+0.7
1,684,774	-		Rru_A1425	0.62	+0.2
1,684,806	+		Rru_A1425	0.65	+0.6
1,684,806	+		Rru_A1425	0.65	+0.2
1,684,807	-		Rru_A1425	0.65	+0.2
1,684,807	-		Rru_A1425	0.65	+0.5
1,685,019	+		Rru_A1425	0.85	-0.4
1,685,019	+		Rru_A1425	0.85	+0.9
1,685,020	-		Rru_A1425	0.85	-0.1
1,685,020	-		Rru_A1425	0.85	-0.1
1,685,020	-		Rru_A1425	0.85	-0.1
1,685,020	-		Rru_A1425	0.85	-0.1
1,685,020	-		Rru_A1425	0.85	+0.4
1,685,020	-		Rru_A1425	0.85	+0.7
1,685,020	-		Rru_A1425	0.85	+0.5
1,685,022	+		Rru_A1425	0.85	-0.1
1,685,023	-		Rru_A1425	0.85	-0.1
1,685,023	-		Rru_A1425	0.85	+0.9
1,685,080	-				+0.2
1,685,080	-				-0.1
1,685,081	+				+0.2
1,685,081	+				-0.1
1,685,082	-				-0.1
1,685,659	+				+0.1
1,686,135	+		Rru_A1426	0.87	-0.1