Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1404

Experiment: acetate; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate; Light intensity 9 uM
1,657,107	+		Rru_A1403	0.67	-0.3
1,657,107	+		Rru_A1403	0.67	-1.1
1,657,107	+		Rru_A1403	0.67	+0.5
1,657,531	+		Rru_A1403	0.89	+0.9
1,657,733	-				+0.6
1,657,733	-				-0.1
1,657,807	+				-0.1
1,657,813	+				-0.1
1,657,814	-				-0.1
1,657,897	-				+1.7
1,658,044	+		Rru_A1404	0.13	-0.1
1,658,054	+		Rru_A1404	0.13	-1.1
1,658,055	-		Rru_A1404	0.13	+0.8
1,658,174	+		Rru_A1404	0.20	-0.1
1,658,174	+		Rru_A1404	0.20	-0.1
1,658,354	+		Rru_A1404	0.29	+1.3
1,658,355	-		Rru_A1404	0.29	+0.2
1,658,355	-		Rru_A1404	0.29	+0.0
1,658,542	+		Rru_A1404	0.40	-0.2
1,658,542	+		Rru_A1404	0.40	-0.1
1,658,543	-		Rru_A1404	0.40	-0.1
1,658,543	-		Rru_A1404	0.40	+0.2
1,658,657	-		Rru_A1404	0.46	-0.5
1,658,657	-		Rru_A1404	0.46	+0.7
1,658,719	+		Rru_A1404	0.49	+0.1
1,659,184	+		Rru_A1404	0.75	-0.1
1,659,185	-		Rru_A1404	0.75	+0.3
1,659,185	-		Rru_A1404	0.75	-0.1
1,659,404	+		Rru_A1404	0.87	-0.1
1,659,562	+				-0.1
1,659,562	+				-0.4
1,659,562	+				+0.4
1,659,563	-				-0.3
1,659,563	-				-1.6
1,659,736	+				-0.8
1,659,736	+				+1.5
1,659,737	-				-0.5
1,659,832	+		Rru_A1405	0.20	-0.1
1,659,880	+		Rru_A1405	0.26	-0.1
1,659,881	-		Rru_A1405	0.26	-1.1
1,659,881	-		Rru_A1405	0.26	-0.1
1,659,898	-		Rru_A1405	0.28	+0.0
1,659,898	-		Rru_A1405	0.28	-0.1
1,659,907	-		Rru_A1405	0.29	-0.1
1,660,048	+		Rru_A1405	0.45	+0.7
1,660,049	-		Rru_A1405	0.45	-1.1
1,660,049	-		Rru_A1405	0.45	+0.4
1,660,050	+		Rru_A1405	0.45	-1.6
1,660,050	+		Rru_A1405	0.45	-0.1
1,660,051	-		Rru_A1405	0.46	+0.5
1,660,051	-		Rru_A1405	0.46	-0.1
1,660,051	-		Rru_A1405	0.46	+0.6
1,660,312	+		Rru_A1405	0.76	-1.6
1,660,313	-		Rru_A1405	0.76	-0.1
1,660,313	-		Rru_A1405	0.76	+0.2
1,660,353	+		Rru_A1405	0.81	+0.3
1,660,354	-		Rru_A1405	0.81	+1.4
1,660,364	-		Rru_A1405	0.82	-0.1
1,660,364	-		Rru_A1405	0.82	-0.1
1,660,429	+		Rru_A1405	0.90	+0.1
1,660,429	+		Rru_A1405	0.90	+0.2
1,660,492	-				-0.1
1,660,513	+				-0.1
1,660,514	-				-0.8
1,660,636	+		Rru_A1406	0.11	-0.3
1,660,636	+		Rru_A1406	0.11	-0.1
1,660,636	+		Rru_A1406	0.11	+0.4
1,660,636	+		Rru_A1406	0.11	-0.4
1,660,636	+		Rru_A1406	0.11	-1.1
1,660,637	-		Rru_A1406	0.11	-0.1
1,660,637	-		Rru_A1406	0.11	-0.1
1,660,637	-		Rru_A1406	0.11	-0.1