Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1381 and Rru_A1382 are separated by 41 nucleotides Rru_A1382 and Rru_A1383 are separated by 4 nucleotides
Rru_A1381: Rru_A1381 - Short chain fatty acid transporter (NCBI), at 1,629,403 to 1,630,851
_A1381
Rru_A1382: Rru_A1382 - Butyrate-acetoacetate CoA-transferase (NCBI), at 1,630,893 to 1,631,549
_A1382
Rru_A1383: Rru_A1383 - Acetate CoA-transferase (NCBI), at 1,631,554 to 1,632,207
_A1383
Position (kb)
1630
1631
1632 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1629.939 kb on + strand, within Rru_A1381 at 1629.939 kb on + strand, within Rru_A1381 at 1629.939 kb on + strand, within Rru_A1381 at 1629.939 kb on + strand, within Rru_A1381 at 1629.940 kb on - strand, within Rru_A1381 at 1629.940 kb on - strand, within Rru_A1381 at 1629.940 kb on - strand, within Rru_A1381 at 1629.941 kb on + strand, within Rru_A1381 at 1629.941 kb on + strand, within Rru_A1381 at 1629.941 kb on + strand, within Rru_A1381 at 1629.941 kb on + strand, within Rru_A1381 at 1629.941 kb on + strand, within Rru_A1381 at 1629.941 kb on + strand, within Rru_A1381 at 1629.941 kb on + strand, within Rru_A1381 at 1630.002 kb on - strand, within Rru_A1381 at 1630.160 kb on + strand, within Rru_A1381 at 1630.197 kb on - strand, within Rru_A1381 at 1630.197 kb on - strand, within Rru_A1381 at 1630.349 kb on + strand, within Rru_A1381 at 1630.350 kb on - strand, within Rru_A1381 at 1630.350 kb on - strand, within Rru_A1381 at 1630.350 kb on - strand, within Rru_A1381 at 1630.350 kb on - strand, within Rru_A1381 at 1630.373 kb on + strand, within Rru_A1381 at 1630.374 kb on - strand, within Rru_A1381 at 1630.455 kb on - strand, within Rru_A1381 at 1630.568 kb on + strand, within Rru_A1381 at 1630.568 kb on + strand, within Rru_A1381 at 1630.768 kb on - strand at 1630.837 kb on + strand at 1630.879 kb on - strand at 1630.879 kb on - strand at 1630.879 kb on - strand at 1630.879 kb on - strand at 1630.879 kb on - strand at 1631.449 kb on + strand, within Rru_A1382 at 1631.449 kb on + strand, within Rru_A1382 at 1631.450 kb on - strand, within Rru_A1382 at 1631.450 kb on - strand, within Rru_A1382 at 1631.711 kb on + strand, within Rru_A1383 at 1632.324 kb on - strand at 1632.434 kb on + strand at 1632.466 kb on + strand at 1632.466 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 1,629,939 + Rru_A1381 0.37 -0.0 1,629,939 + Rru_A1381 0.37 +0.9 1,629,939 + Rru_A1381 0.37 -0.0 1,629,939 + Rru_A1381 0.37 -0.6 1,629,940 - Rru_A1381 0.37 +0.7 1,629,940 - Rru_A1381 0.37 -0.0 1,629,940 - Rru_A1381 0.37 +0.3 1,629,941 + Rru_A1381 0.37 -0.0 1,629,941 + Rru_A1381 0.37 +0.3 1,629,941 + Rru_A1381 0.37 -0.0 1,629,941 + Rru_A1381 0.37 +0.7 1,629,941 + Rru_A1381 0.37 -0.0 1,629,941 + Rru_A1381 0.37 -0.3 1,629,941 + Rru_A1381 0.37 -0.0 1,630,002 - Rru_A1381 0.41 -0.2 1,630,160 + Rru_A1381 0.52 +0.3 1,630,197 - Rru_A1381 0.55 -0.0 1,630,197 - Rru_A1381 0.55 -0.0 1,630,349 + Rru_A1381 0.65 +2.9 1,630,350 - Rru_A1381 0.65 +1.0 1,630,350 - Rru_A1381 0.65 -0.0 1,630,350 - Rru_A1381 0.65 -0.0 1,630,350 - Rru_A1381 0.65 -0.0 1,630,373 + Rru_A1381 0.67 -0.0 1,630,374 - Rru_A1381 0.67 -0.0 1,630,455 - Rru_A1381 0.73 -0.3 1,630,568 + Rru_A1381 0.80 -0.2 1,630,568 + Rru_A1381 0.80 +0.5 1,630,768 - +0.2 1,630,837 + -0.6 1,630,879 - -0.0 1,630,879 - +0.3 1,630,879 - -0.0 1,630,879 - -0.0 1,630,879 - -1.6 1,631,449 + Rru_A1382 0.85 -0.6 1,631,449 + Rru_A1382 0.85 +2.3 1,631,450 - Rru_A1382 0.85 +0.5 1,631,450 - Rru_A1382 0.85 -0.5 1,631,711 + Rru_A1383 0.24 -0.2 1,632,324 - -0.0 1,632,434 + -0.0 1,632,466 + -0.0 1,632,466 + -1.8
Or see this region's nucleotide sequence