Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1356 and Rru_A1357 are separated by 302 nucleotides Rru_A1357 and Rru_A1358 are separated by 165 nucleotides
Rru_A1356: Rru_A1356 - Catalase (NCBI), at 1,596,203 to 1,598,317
_A1356
Rru_A1357: Rru_A1357 - Transaldolase AB (NCBI), at 1,598,620 to 1,599,603
_A1357
Rru_A1358: Rru_A1358 - Triosephosphate isomerase (NCBI), at 1,599,769 to 1,600,545
_A1358
Position (kb) 1598
1599
1600 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1597.683 kb on - strand, within Rru_A1356 at 1597.690 kb on + strand, within Rru_A1356 at 1597.690 kb on + strand, within Rru_A1356 at 1597.690 kb on + strand, within Rru_A1356 at 1597.690 kb on + strand, within Rru_A1356 at 1597.690 kb on + strand, within Rru_A1356 at 1597.690 kb on + strand, within Rru_A1356 at 1597.691 kb on - strand, within Rru_A1356 at 1597.691 kb on - strand, within Rru_A1356 at 1597.691 kb on - strand, within Rru_A1356 at 1597.691 kb on - strand, within Rru_A1356 at 1597.691 kb on - strand, within Rru_A1356 at 1597.861 kb on + strand, within Rru_A1356 at 1597.861 kb on + strand, within Rru_A1356 at 1597.875 kb on + strand, within Rru_A1356 at 1597.876 kb on - strand, within Rru_A1356 at 1597.991 kb on - strand, within Rru_A1356 at 1598.012 kb on + strand, within Rru_A1356 at 1598.012 kb on + strand, within Rru_A1356 at 1598.022 kb on + strand, within Rru_A1356 at 1598.022 kb on + strand, within Rru_A1356 at 1598.022 kb on + strand, within Rru_A1356 at 1598.023 kb on - strand, within Rru_A1356 at 1598.023 kb on - strand, within Rru_A1356 at 1598.322 kb on + strand at 1598.323 kb on - strand at 1598.323 kb on - strand at 1598.479 kb on + strand at 1598.497 kb on + strand at 1598.500 kb on - strand at 1598.603 kb on + strand at 1598.604 kb on - strand at 1598.604 kb on - strand at 1598.604 kb on - strand at 1598.604 kb on - strand at 1598.604 kb on - strand at 1598.969 kb on + strand, within Rru_A1357 at 1598.969 kb on + strand, within Rru_A1357 at 1598.969 kb on + strand, within Rru_A1357 at 1598.975 kb on + strand, within Rru_A1357 at 1598.975 kb on + strand, within Rru_A1357 at 1598.975 kb on + strand, within Rru_A1357 at 1598.975 kb on + strand, within Rru_A1357 at 1598.975 kb on + strand, within Rru_A1357 at 1598.975 kb on + strand, within Rru_A1357 at 1598.976 kb on - strand, within Rru_A1357 at 1598.976 kb on - strand, within Rru_A1357 at 1599.080 kb on - strand, within Rru_A1357 at 1599.459 kb on - strand, within Rru_A1357 at 1599.459 kb on - strand, within Rru_A1357 at 1599.771 kb on - strand at 1600.049 kb on + strand, within Rru_A1358 at 1600.478 kb on + strand at 1600.479 kb on - strand at 1600.563 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 1,597,683 - Rru_A1356 0.70 +0.8 1,597,690 + Rru_A1356 0.70 -0.1 1,597,690 + Rru_A1356 0.70 +0.5 1,597,690 + Rru_A1356 0.70 -0.2 1,597,690 + Rru_A1356 0.70 +0.0 1,597,690 + Rru_A1356 0.70 +1.9 1,597,690 + Rru_A1356 0.70 -0.1 1,597,691 - Rru_A1356 0.70 -0.7 1,597,691 - Rru_A1356 0.70 +0.9 1,597,691 - Rru_A1356 0.70 -0.1 1,597,691 - Rru_A1356 0.70 -0.1 1,597,691 - Rru_A1356 0.70 +0.9 1,597,861 + Rru_A1356 0.78 -0.1 1,597,861 + Rru_A1356 0.78 -2.4 1,597,875 + Rru_A1356 0.79 -0.1 1,597,876 - Rru_A1356 0.79 -0.1 1,597,991 - Rru_A1356 0.85 -0.1 1,598,012 + Rru_A1356 0.86 -0.1 1,598,012 + Rru_A1356 0.86 -0.1 1,598,022 + Rru_A1356 0.86 -0.1 1,598,022 + Rru_A1356 0.86 -0.1 1,598,022 + Rru_A1356 0.86 -0.1 1,598,023 - Rru_A1356 0.86 -0.1 1,598,023 - Rru_A1356 0.86 -0.2 1,598,322 + -0.4 1,598,323 - +0.2 1,598,323 - -0.0 1,598,479 + +0.7 1,598,497 + +0.7 1,598,500 - -0.0 1,598,603 + -0.0 1,598,604 - +0.7 1,598,604 - -0.0 1,598,604 - +1.5 1,598,604 - +1.1 1,598,604 - -0.0 1,598,969 + Rru_A1357 0.35 -0.0 1,598,969 + Rru_A1357 0.35 -0.0 1,598,969 + Rru_A1357 0.35 -1.0 1,598,975 + Rru_A1357 0.36 -1.0 1,598,975 + Rru_A1357 0.36 -0.0 1,598,975 + Rru_A1357 0.36 +1.0 1,598,975 + Rru_A1357 0.36 -0.0 1,598,975 + Rru_A1357 0.36 -0.0 1,598,975 + Rru_A1357 0.36 -1.0 1,598,976 - Rru_A1357 0.36 -0.4 1,598,976 - Rru_A1357 0.36 -0.0 1,599,080 - Rru_A1357 0.47 -0.0 1,599,459 - Rru_A1357 0.85 -0.0 1,599,459 - Rru_A1357 0.85 -0.0 1,599,771 - -0.0 1,600,049 + Rru_A1358 0.36 -0.0 1,600,478 + -0.0 1,600,479 - -0.0 1,600,563 + +1.1
Or see this region's nucleotide sequence