Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1343

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nt11723600 and 11438846 are separated by 0 nucleotides11438846 and 11581209 overlap by 29 nucleotides11581209 and 11723601 overlap by 29 nucleotides11723601 and 11438847 are separated by 0 nucleotides11438847 and 11581210 overlap by 32 nucleotides11581210 and 11723602 overlap by 32 nucleotides11723602 and 11438848 are separated by 0 nucleotides11438848 and 11581211 overlap by 29 nucleotides11581211 and 11723603 overlap by 29 nucleotides11723603 and 11438849 are separated by 0 nucleotides11438849 and 11581212 overlap by 32 nucleotides11581212 and 11723604 overlap by 32 nucleotides11723604 and 11438850 are separated by 0 nucleotides11438850 and 11581213 overlap by 29 nucleotides11581213 and 11723605 overlap by 29 nucleotides11723605 and 11438851 are separated by 0 nucleotides11438851 and 11581214 overlap by 32 nucleotides11581214 and 11723606 overlap by 32 nucleotides11723606 and 11438852 are separated by 0 nucleotides11438852 and 11581215 overlap by 29 nucleotides11581215 and 11723607 overlap by 29 nucleotides11723607 and 11438853 are separated by 0 nucleotides11438853 and 11581216 overlap by 32 nucleotides11581216 and 11723608 overlap by 32 nucleotides11723608 and 11438854 are separated by 0 nucleotides11438854 and 11581217 overlap by 29 nucleotides11581217 and 11723609 overlap by 29 nucleotides11723609 and 11438855 are separated by 0 nucleotides11438855 and 11581218 overlap by 32 nucleotides11581218 and 11723610 overlap by 32 nucleotides11723610 and 11438856 are separated by 0 nucleotides11438856 and 11581219 overlap by 29 nucleotides11581219 and 11723611 overlap by 29 nucleotides11723611 and 11438857 are separated by 0 nucleotides11438857 and 11581220 overlap by 32 nucleotides11581220 and 11723612 overlap by 32 nucleotides11723612 and 11438858 are separated by 0 nucleotides11438858 and 11581221 overlap by 29 nucleotides11581221 and 11723613 overlap by 29 nucleotides11723613 and 11438859 are separated by 0 nucleotides11438859 and 11581222 overlap by 32 nucleotides11581222 and 11723614 overlap by 32 nucleotides11723614 and 11438860 are separated by 0 nucleotides11438860 and 11581223 overlap by 29 nucleotides11581223 and 11723615 overlap by 29 nucleotides11723615 and 11438861 are separated by 0 nucleotides11438861 and 11581224 overlap by 32 nucleotides11581224 and 11723616 overlap by 32 nucleotides11723616 and 11438862 are separated by 0 nucleotides11438862 and 11581225 overlap by 29 nucleotides11581225 and 11723617 overlap by 29 nucleotides11723617 and 11438863 are separated by 0 nucleotides11438863 and 11581226 overlap by 32 nucleotides11581226 and 11723618 overlap by 32 nucleotides11723618 and 11438864 are separated by 0 nucleotides11438864 and 11581227 overlap by 29 nucleotides11581227 and 11723619 overlap by 29 nucleotides11723619 and 11438865 are separated by 0 nucleotides11438865 and 11581228 overlap by 32 nucleotides11581228 and 11723620 overlap by 32 nucleotides11723620 and 11438866 are separated by 0 nucleotides11438866 and 11581229 overlap by 29 nucleotides11581229 and 11723621 overlap by 29 nucleotides11723621 and 11438867 are separated by 0 nucleotides11438867 and 11581230 overlap by 32 nucleotides11581230 and 11723622 overlap by 32 nucleotides11723622 and 11438868 are separated by 0 nucleotides11438868 and 11581231 overlap by 29 nucleotides11581231 and 11723623 overlap by 29 nucleotides11723623 and Rru_A1343 are separated by 284 nucleotidesRru_A1343 and Rru_A1344 are separated by 140 nucleotides 11438845 - no description, at 1,581,230 to 1,581,261 11438845 11581208 - no description, at 1,581,230 to 1,581,261 11581208 11723600 - no description, at 1,581,230 to 1,581,261 11723600 11438846 - no description, at 1,581,262 to 1,581,290 11438846 11581209 - no description, at 1,581,262 to 1,581,290 11581209 11723601 - no description, at 1,581,262 to 1,581,290 11723601 11438847 - no description, at 1,581,291 to 1,581,322 11438847 11581210 - no description, at 1,581,291 to 1,581,322 11581210 11723602 - no description, at 1,581,291 to 1,581,322 11723602 11438848 - no description, at 1,581,323 to 1,581,351 11438848 11581211 - no description, at 1,581,323 to 1,581,351 11581211 11723603 - no description, at 1,581,323 to 1,581,351 11723603 11438849 - no description, at 1,581,352 to 1,581,383 11438849 11581212 - no description, at 1,581,352 to 1,581,383 11581212 11723604 - no description, at 1,581,352 to 1,581,383 11723604 11438850 - no description, at 1,581,384 to 1,581,412 11438850 11581213 - no description, at 1,581,384 to 1,581,412 11581213 11723605 - no description, at 1,581,384 to 1,581,412 11723605 11438851 - no description, at 1,581,413 to 1,581,444 11438851 11581214 - no description, at 1,581,413 to 1,581,444 11581214 11723606 - no description, at 1,581,413 to 1,581,444 11723606 11438852 - no description, at 1,581,445 to 1,581,473 11438852 11581215 - no description, at 1,581,445 to 1,581,473 11581215 11723607 - no description, at 1,581,445 to 1,581,473 11723607 11438853 - no description, at 1,581,474 to 1,581,505 11438853 11581216 - no description, at 1,581,474 to 1,581,505 11581216 11723608 - no description, at 1,581,474 to 1,581,505 11723608 11438854 - no description, at 1,581,506 to 1,581,534 11438854 11581217 - no description, at 1,581,506 to 1,581,534 11581217 11723609 - no description, at 1,581,506 to 1,581,534 11723609 11438855 - no description, at 1,581,535 to 1,581,566 11438855 11581218 - no description, at 1,581,535 to 1,581,566 11581218 11723610 - no description, at 1,581,535 to 1,581,566 11723610 11438856 - no description, at 1,581,567 to 1,581,595 11438856 11581219 - no description, at 1,581,567 to 1,581,595 11581219 11723611 - no description, at 1,581,567 to 1,581,595 11723611 11438857 - no description, at 1,581,596 to 1,581,627 11438857 11581220 - no description, at 1,581,596 to 1,581,627 11581220 11723612 - no description, at 1,581,596 to 1,581,627 11723612 11438858 - no description, at 1,581,628 to 1,581,656 11438858 11581221 - no description, at 1,581,628 to 1,581,656 11581221 11723613 - no description, at 1,581,628 to 1,581,656 11723613 11438859 - no description, at 1,581,657 to 1,581,688 11438859 11581222 - no description, at 1,581,657 to 1,581,688 11581222 11723614 - no description, at 1,581,657 to 1,581,688 11723614 11438860 - no description, at 1,581,689 to 1,581,717 11438860 11581223 - no description, at 1,581,689 to 1,581,717 11581223 11723615 - no description, at 1,581,689 to 1,581,717 11723615 11438861 - no description, at 1,581,718 to 1,581,749 11438861 11581224 - no description, at 1,581,718 to 1,581,749 11581224 11723616 - no description, at 1,581,718 to 1,581,749 11723616 11438862 - no description, at 1,581,750 to 1,581,778 11438862 11581225 - no description, at 1,581,750 to 1,581,778 11581225 11723617 - no description, at 1,581,750 to 1,581,778 11723617 11438863 - no description, at 1,581,779 to 1,581,810 11438863 11581226 - no description, at 1,581,779 to 1,581,810 11581226 11723618 - no description, at 1,581,779 to 1,581,810 11723618 11438864 - no description, at 1,581,811 to 1,581,839 11438864 11581227 - no description, at 1,581,811 to 1,581,839 11581227 11723619 - no description, at 1,581,811 to 1,581,839 11723619 11438865 - no description, at 1,581,840 to 1,581,871 11438865 11581228 - no description, at 1,581,840 to 1,581,871 11581228 11723620 - no description, at 1,581,840 to 1,581,871 11723620 11438866 - no description, at 1,581,872 to 1,581,900 11438866 11581229 - no description, at 1,581,872 to 1,581,900 11581229 11723621 - no description, at 1,581,872 to 1,581,900 11723621 11438867 - no description, at 1,581,901 to 1,581,932 11438867 11581230 - no description, at 1,581,901 to 1,581,932 11581230 11723622 - no description, at 1,581,901 to 1,581,932 11723622 11438868 - no description, at 1,581,933 to 1,581,961 11438868 11581231 - no description, at 1,581,933 to 1,581,961 11581231 11723623 - no description, at 1,581,933 to 1,581,961 11723623 Rru_A1343: Rru_A1343 - hypothetical protein (NCBI), at 1,582,246 to 1,583,757 _A1343 Rru_A1344: Rru_A1344 - Transcriptional Regulator, IclR family (NCBI), at 1,583,898 to 1,584,686 _A1344 Position (kb) 1582 1583 1584Strain fitness (log2 ratio) -2 -1 0 1 2at 1581.259 kb on + strandat 1581.260 kb on - strandat 1581.260 kb on - strandat 1581.357 kb on + strandat 1581.357 kb on + strandat 1581.357 kb on + strandat 1581.357 kb on + strandat 1581.357 kb on + strandat 1581.357 kb on + strandat 1581.358 kb on - strandat 1581.436 kb on + strandat 1581.623 kb on + strandat 1581.623 kb on + strandat 1581.624 kb on - strandat 1581.624 kb on - strandat 1581.624 kb on - strandat 1581.624 kb on - strandat 1581.624 kb on - strandat 1581.624 kb on - strandat 1581.657 kb on + strandat 1581.657 kb on + strandat 1581.657 kb on + strandat 1581.657 kb on + strandat 1581.657 kb on + strandat 1581.657 kb on + strandat 1581.658 kb on - strandat 1581.658 kb on - strandat 1581.658 kb on - strandat 1581.658 kb on - strandat 1582.056 kb on - strandat 1582.070 kb on + strandat 1582.071 kb on - strandat 1582.217 kb on + strandat 1582.405 kb on - strand, within Rru_A1343at 1582.416 kb on + strand, within Rru_A1343at 1582.416 kb on + strand, within Rru_A1343at 1582.416 kb on + strand, within Rru_A1343at 1582.416 kb on + strand, within Rru_A1343at 1582.416 kb on + strand, within Rru_A1343at 1582.416 kb on + strand, within Rru_A1343at 1582.416 kb on + strand, within Rru_A1343at 1582.417 kb on - strand, within Rru_A1343at 1582.417 kb on - strand, within Rru_A1343at 1582.417 kb on - strand, within Rru_A1343at 1582.557 kb on - strand, within Rru_A1343at 1582.557 kb on - strand, within Rru_A1343at 1582.557 kb on - strand, within Rru_A1343at 1582.557 kb on - strand, within Rru_A1343at 1582.559 kb on + strand, within Rru_A1343at 1582.559 kb on + strand, within Rru_A1343at 1582.892 kb on + strand, within Rru_A1343at 1582.892 kb on + strand, within Rru_A1343at 1582.892 kb on + strand, within Rru_A1343at 1582.893 kb on - strand, within Rru_A1343at 1582.982 kb on + strand, within Rru_A1343at 1583.199 kb on - strand, within Rru_A1343at 1583.199 kb on - strand, within Rru_A1343at 1583.243 kb on + strand, within Rru_A1343at 1583.243 kb on + strand, within Rru_A1343at 1583.244 kb on - strand, within Rru_A1343at 1583.244 kb on - strand, within Rru_A1343at 1583.424 kb on - strand, within Rru_A1343at 1583.672 kb on + strandat 1583.672 kb on + strandat 1583.673 kb on - strandat 1583.673 kb on - strandat 1583.796 kb on + strandat 1583.821 kb on + strandat 1583.831 kb on - strandat 1584.041 kb on + strand, within Rru_A1344at 1584.042 kb on - strand, within Rru_A1344at 1584.042 kb on - strand, within Rru_A1344at 1584.078 kb on - strand, within Rru_A1344at 1584.087 kb on + strand, within Rru_A1344at 1584.157 kb on - strand, within Rru_A1344at 1584.157 kb on - strand, within Rru_A1344at 1584.267 kb on + strand, within Rru_A1344at 1584.267 kb on + strand, within Rru_A1344at 1584.267 kb on + strand, within Rru_A1344

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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1,581,259 + +0.9
1,581,260 - +0.6
1,581,260 - -0.0
1,581,357 + -0.0
1,581,357 + +0.7
1,581,357 + -0.0
1,581,357 + -1.0
1,581,357 + +0.5
1,581,357 + +0.4
1,581,358 - -0.0
1,581,436 + -0.0
1,581,623 + +1.1
1,581,623 + +0.4
1,581,624 - -0.0
1,581,624 - +0.9
1,581,624 - +2.3
1,581,624 - +0.6
1,581,624 - +0.7
1,581,624 - +0.6
1,581,657 + -0.4
1,581,657 + -0.0
1,581,657 + -0.0
1,581,657 + +2.0
1,581,657 + -0.3
1,581,657 + -0.8
1,581,658 - +0.1
1,581,658 - +1.6
1,581,658 - -1.0
1,581,658 - +0.8
1,582,056 - -1.0
1,582,070 + +0.9
1,582,071 - +0.3
1,582,217 + +0.3
1,582,405 - Rru_A1343 0.11 +0.3
1,582,416 + Rru_A1343 0.11 +0.6
1,582,416 + Rru_A1343 0.11 -0.0
1,582,416 + Rru_A1343 0.11 +0.5
1,582,416 + Rru_A1343 0.11 +0.6
1,582,416 + Rru_A1343 0.11 +0.5
1,582,416 + Rru_A1343 0.11 -0.0
1,582,416 + Rru_A1343 0.11 +0.5
1,582,417 - Rru_A1343 0.11 +0.8
1,582,417 - Rru_A1343 0.11 -0.0
1,582,417 - Rru_A1343 0.11 -0.6
1,582,557 - Rru_A1343 0.21 -0.0
1,582,557 - Rru_A1343 0.21 +0.1
1,582,557 - Rru_A1343 0.21 -1.0
1,582,557 - Rru_A1343 0.21 +0.4
1,582,559 + Rru_A1343 0.21 +0.5
1,582,559 + Rru_A1343 0.21 -0.0
1,582,892 + Rru_A1343 0.43 -0.0
1,582,892 + Rru_A1343 0.43 -0.0
1,582,892 + Rru_A1343 0.43 +0.6
1,582,893 - Rru_A1343 0.43 -0.0
1,582,982 + Rru_A1343 0.49 +0.5
1,583,199 - Rru_A1343 0.63 +1.5
1,583,199 - Rru_A1343 0.63 +0.2
1,583,243 + Rru_A1343 0.66 +0.7
1,583,243 + Rru_A1343 0.66 -0.0
1,583,244 - Rru_A1343 0.66 +0.8
1,583,244 - Rru_A1343 0.66 +0.0
1,583,424 - Rru_A1343 0.78 -0.0
1,583,672 + -0.0
1,583,672 + +0.7
1,583,673 - +0.9
1,583,673 - -2.6
1,583,796 + +1.4
1,583,821 + +0.6
1,583,831 - +0.3
1,584,041 + Rru_A1344 0.18 -0.0
1,584,042 - Rru_A1344 0.18 +0.2
1,584,042 - Rru_A1344 0.18 -0.4
1,584,078 - Rru_A1344 0.23 -1.0
1,584,087 + Rru_A1344 0.24 +0.3
1,584,157 - Rru_A1344 0.33 -0.2
1,584,157 - Rru_A1344 0.33 +0.3
1,584,267 + Rru_A1344 0.47 -1.0
1,584,267 + Rru_A1344 0.47 -1.0
1,584,267 + Rru_A1344 0.47 -0.0

Or see this region's nucleotide sequence