Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1304 and Rru_A1305 are separated by 9 nucleotides Rru_A1305 and Rru_A1306 are separated by 19 nucleotides Rru_A1306 and Rru_A1307 overlap by 4 nucleotides Rru_A1307 and Rru_A1308 are separated by 108 nucleotides
Rru_A1304: Rru_A1304 - Urocanate hydratase (NCBI), at 1,538,781 to 1,540,451
_A1304
Rru_A1305: Rru_A1305 - Predicted transcriptional regulator (NCBI), at 1,540,461 to 1,540,757
_A1305
Rru_A1306: Rru_A1306 - Short-chain dehydrogenase/reductase SDR (NCBI), at 1,540,777 to 1,541,610
_A1306
Rru_A1307: Rru_A1307 - Thioesterase superfamily (NCBI), at 1,541,607 to 1,542,119
_A1307
Rru_A1308: Rru_A1308 - Acyl-CoA dehydrogenase (NCBI), at 1,542,228 to 1,544,018
_A1308
Position (kb) 1540
1541
1542 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1539.825 kb on + strand, within Rru_A1304 at 1539.826 kb on - strand, within Rru_A1304 at 1539.826 kb on - strand, within Rru_A1304 at 1539.826 kb on - strand, within Rru_A1304 at 1539.826 kb on - strand, within Rru_A1304 at 1539.826 kb on - strand, within Rru_A1304 at 1539.896 kb on + strand, within Rru_A1304 at 1539.896 kb on + strand, within Rru_A1304 at 1539.896 kb on + strand, within Rru_A1304 at 1539.897 kb on - strand, within Rru_A1304 at 1539.897 kb on - strand, within Rru_A1304 at 1539.897 kb on - strand, within Rru_A1304 at 1539.897 kb on - strand, within Rru_A1304 at 1539.897 kb on - strand, within Rru_A1304 at 1539.897 kb on - strand, within Rru_A1304 at 1539.900 kb on + strand, within Rru_A1304 at 1539.900 kb on + strand, within Rru_A1304 at 1539.900 kb on + strand, within Rru_A1304 at 1539.900 kb on + strand, within Rru_A1304 at 1539.901 kb on - strand, within Rru_A1304 at 1539.980 kb on + strand, within Rru_A1304 at 1539.980 kb on + strand, within Rru_A1304 at 1540.081 kb on + strand, within Rru_A1304 at 1540.450 kb on - strand at 1540.691 kb on - strand, within Rru_A1305 at 1540.691 kb on - strand, within Rru_A1305 at 1540.691 kb on - strand, within Rru_A1305 at 1541.106 kb on + strand, within Rru_A1306 at 1541.106 kb on + strand, within Rru_A1306 at 1541.106 kb on + strand, within Rru_A1306 at 1541.106 kb on + strand, within Rru_A1306 at 1541.106 kb on + strand, within Rru_A1306 at 1541.107 kb on - strand, within Rru_A1306 at 1541.107 kb on - strand, within Rru_A1306 at 1541.169 kb on + strand, within Rru_A1306 at 1541.502 kb on + strand, within Rru_A1306 at 1541.503 kb on - strand, within Rru_A1306 at 1541.611 kb on - strand at 1541.708 kb on - strand, within Rru_A1307 at 1542.029 kb on + strand, within Rru_A1307 at 1542.029 kb on + strand, within Rru_A1307 at 1542.030 kb on - strand, within Rru_A1307 at 1542.030 kb on - strand, within Rru_A1307 at 1542.030 kb on - strand, within Rru_A1307 at 1542.030 kb on - strand, within Rru_A1307 at 1542.213 kb on + strand at 1542.396 kb on + strand at 1542.422 kb on - strand, within Rru_A1308 at 1542.435 kb on - strand, within Rru_A1308 at 1542.455 kb on - strand, within Rru_A1308 at 1542.601 kb on + strand, within Rru_A1308 at 1542.601 kb on + strand, within Rru_A1308 at 1542.601 kb on + strand, within Rru_A1308 at 1542.601 kb on + strand, within Rru_A1308
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 1,539,825 + Rru_A1304 0.62 +1.0 1,539,826 - Rru_A1304 0.63 +0.2 1,539,826 - Rru_A1304 0.63 -0.0 1,539,826 - Rru_A1304 0.63 +0.4 1,539,826 - Rru_A1304 0.63 -0.0 1,539,826 - Rru_A1304 0.63 +0.1 1,539,896 + Rru_A1304 0.67 +1.1 1,539,896 + Rru_A1304 0.67 +0.6 1,539,896 + Rru_A1304 0.67 +2.4 1,539,897 - Rru_A1304 0.67 -0.0 1,539,897 - Rru_A1304 0.67 -0.0 1,539,897 - Rru_A1304 0.67 +0.6 1,539,897 - Rru_A1304 0.67 -1.0 1,539,897 - Rru_A1304 0.67 -0.1 1,539,897 - Rru_A1304 0.67 -0.0 1,539,900 + Rru_A1304 0.67 +0.4 1,539,900 + Rru_A1304 0.67 -0.6 1,539,900 + Rru_A1304 0.67 -0.7 1,539,900 + Rru_A1304 0.67 -0.0 1,539,901 - Rru_A1304 0.67 -0.6 1,539,980 + Rru_A1304 0.72 -0.9 1,539,980 + Rru_A1304 0.72 +0.0 1,540,081 + Rru_A1304 0.78 -0.0 1,540,450 - +1.2 1,540,691 - Rru_A1305 0.77 -0.0 1,540,691 - Rru_A1305 0.77 -0.0 1,540,691 - Rru_A1305 0.77 -0.0 1,541,106 + Rru_A1306 0.39 -0.0 1,541,106 + Rru_A1306 0.39 +0.5 1,541,106 + Rru_A1306 0.39 -0.0 1,541,106 + Rru_A1306 0.39 +0.1 1,541,106 + Rru_A1306 0.39 -1.2 1,541,107 - Rru_A1306 0.40 -0.2 1,541,107 - Rru_A1306 0.40 -0.0 1,541,169 + Rru_A1306 0.47 -1.1 1,541,502 + Rru_A1306 0.87 +0.7 1,541,503 - Rru_A1306 0.87 +0.5 1,541,611 - -0.0 1,541,708 - Rru_A1307 0.20 +0.5 1,542,029 + Rru_A1307 0.82 -0.0 1,542,029 + Rru_A1307 0.82 -1.0 1,542,030 - Rru_A1307 0.82 +0.2 1,542,030 - Rru_A1307 0.82 +0.4 1,542,030 - Rru_A1307 0.82 +0.8 1,542,030 - Rru_A1307 0.82 -0.7 1,542,213 + -1.0 1,542,396 + -0.0 1,542,422 - Rru_A1308 0.11 -0.6 1,542,435 - Rru_A1308 0.12 -0.7 1,542,455 - Rru_A1308 0.13 -0.0 1,542,601 + Rru_A1308 0.21 -2.0 1,542,601 + Rru_A1308 0.21 -0.0 1,542,601 + Rru_A1308 0.21 -0.0 1,542,601 + Rru_A1308 0.21 -0.0
Or see this region's nucleotide sequence