Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1303

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1302 and Rru_A1303 are separated by 103 nucleotidesRru_A1303 and Rru_A1304 are separated by 29 nucleotides Rru_A1302: Rru_A1302 - Formiminoglutamate deiminase (NCBI), at 1,536,036 to 1,537,403 _A1302 Rru_A1303: Rru_A1303 - Imidazolonepropionase (NCBI), at 1,537,507 to 1,538,751 _A1303 Rru_A1304: Rru_A1304 - Urocanate hydratase (NCBI), at 1,538,781 to 1,540,451 _A1304 Position (kb) 1537 1538 1539Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1536.678 kb on - strand, within Rru_A1302at 1536.701 kb on + strand, within Rru_A1302at 1536.702 kb on - strand, within Rru_A1302at 1536.922 kb on + strand, within Rru_A1302at 1536.923 kb on - strand, within Rru_A1302at 1536.923 kb on - strand, within Rru_A1302at 1536.923 kb on - strand, within Rru_A1302at 1537.037 kb on - strand, within Rru_A1302at 1537.037 kb on - strand, within Rru_A1302at 1537.060 kb on + strand, within Rru_A1302at 1537.084 kb on + strand, within Rru_A1302at 1537.084 kb on + strand, within Rru_A1302at 1537.085 kb on - strand, within Rru_A1302at 1537.141 kb on + strand, within Rru_A1302at 1537.141 kb on + strand, within Rru_A1302at 1537.419 kb on - strandat 1537.419 kb on - strandat 1537.419 kb on - strandat 1537.421 kb on + strandat 1537.422 kb on - strandat 1537.423 kb on + strandat 1537.435 kb on + strandat 1537.734 kb on + strand, within Rru_A1303at 1537.798 kb on + strand, within Rru_A1303at 1537.799 kb on - strand, within Rru_A1303at 1537.799 kb on - strand, within Rru_A1303at 1537.799 kb on - strand, within Rru_A1303at 1537.799 kb on - strand, within Rru_A1303at 1538.022 kb on + strand, within Rru_A1303at 1538.087 kb on - strand, within Rru_A1303at 1538.087 kb on - strand, within Rru_A1303at 1538.087 kb on - strand, within Rru_A1303at 1538.087 kb on - strand, within Rru_A1303at 1538.089 kb on - strand, within Rru_A1303at 1538.320 kb on + strand, within Rru_A1303at 1538.321 kb on - strand, within Rru_A1303at 1538.394 kb on + strand, within Rru_A1303at 1538.394 kb on + strand, within Rru_A1303at 1538.394 kb on + strand, within Rru_A1303at 1538.394 kb on + strand, within Rru_A1303at 1538.394 kb on + strand, within Rru_A1303at 1538.394 kb on + strand, within Rru_A1303at 1538.394 kb on + strand, within Rru_A1303at 1538.394 kb on + strand, within Rru_A1303at 1538.395 kb on - strand, within Rru_A1303at 1538.395 kb on - strand, within Rru_A1303at 1538.970 kb on + strand, within Rru_A1304at 1538.970 kb on + strand, within Rru_A1304at 1538.970 kb on + strand, within Rru_A1304at 1538.970 kb on + strand, within Rru_A1304at 1538.971 kb on - strand, within Rru_A1304at 1538.971 kb on - strand, within Rru_A1304at 1538.971 kb on - strand, within Rru_A1304at 1538.971 kb on - strand, within Rru_A1304at 1539.163 kb on - strand, within Rru_A1304at 1539.192 kb on + strand, within Rru_A1304at 1539.192 kb on + strand, within Rru_A1304at 1539.192 kb on + strand, within Rru_A1304at 1539.193 kb on - strand, within Rru_A1304at 1539.193 kb on - strand, within Rru_A1304at 1539.193 kb on - strand, within Rru_A1304at 1539.193 kb on - strand, within Rru_A1304at 1539.225 kb on + strand, within Rru_A1304at 1539.225 kb on + strand, within Rru_A1304at 1539.225 kb on + strand, within Rru_A1304at 1539.225 kb on + strand, within Rru_A1304at 1539.225 kb on + strand, within Rru_A1304at 1539.225 kb on + strand, within Rru_A1304at 1539.226 kb on - strand, within Rru_A1304at 1539.226 kb on - strand, within Rru_A1304at 1539.226 kb on - strand, within Rru_A1304at 1539.226 kb on - strand, within Rru_A1304at 1539.226 kb on - strand, within Rru_A1304at 1539.226 kb on - strand, within Rru_A1304at 1539.258 kb on + strand, within Rru_A1304at 1539.259 kb on - strand, within Rru_A1304at 1539.308 kb on + strand, within Rru_A1304at 1539.308 kb on + strand, within Rru_A1304at 1539.408 kb on + strand, within Rru_A1304at 1539.408 kb on + strand, within Rru_A1304at 1539.409 kb on - strand, within Rru_A1304at 1539.600 kb on + strand, within Rru_A1304at 1539.601 kb on - strand, within Rru_A1304at 1539.601 kb on - strand, within Rru_A1304at 1539.601 kb on - strand, within Rru_A1304at 1539.748 kb on - strand, within Rru_A1304

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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1,536,678 - Rru_A1302 0.47 +0.9
1,536,701 + Rru_A1302 0.49 -0.7
1,536,702 - Rru_A1302 0.49 -0.0
1,536,922 + Rru_A1302 0.65 -0.0
1,536,923 - Rru_A1302 0.65 -2.0
1,536,923 - Rru_A1302 0.65 +0.2
1,536,923 - Rru_A1302 0.65 -0.1
1,537,037 - Rru_A1302 0.73 -0.0
1,537,037 - Rru_A1302 0.73 -3.0
1,537,060 + Rru_A1302 0.75 -0.2
1,537,084 + Rru_A1302 0.77 +0.7
1,537,084 + Rru_A1302 0.77 -0.0
1,537,085 - Rru_A1302 0.77 -0.0
1,537,141 + Rru_A1302 0.81 -0.5
1,537,141 + Rru_A1302 0.81 -0.0
1,537,419 - -0.0
1,537,419 - -0.0
1,537,419 - -0.0
1,537,421 + +0.4
1,537,422 - -0.8
1,537,423 + -0.0
1,537,435 + -0.0
1,537,734 + Rru_A1303 0.18 +1.0
1,537,798 + Rru_A1303 0.23 -0.0
1,537,799 - Rru_A1303 0.23 -0.0
1,537,799 - Rru_A1303 0.23 +0.9
1,537,799 - Rru_A1303 0.23 +0.4
1,537,799 - Rru_A1303 0.23 -0.0
1,538,022 + Rru_A1303 0.41 +1.9
1,538,087 - Rru_A1303 0.47 -1.0
1,538,087 - Rru_A1303 0.47 -0.0
1,538,087 - Rru_A1303 0.47 +1.1
1,538,087 - Rru_A1303 0.47 -0.0
1,538,089 - Rru_A1303 0.47 +0.6
1,538,320 + Rru_A1303 0.65 +0.6
1,538,321 - Rru_A1303 0.65 -0.0
1,538,394 + Rru_A1303 0.71 +0.6
1,538,394 + Rru_A1303 0.71 -0.0
1,538,394 + Rru_A1303 0.71 +0.6
1,538,394 + Rru_A1303 0.71 +0.0
1,538,394 + Rru_A1303 0.71 -0.8
1,538,394 + Rru_A1303 0.71 -0.0
1,538,394 + Rru_A1303 0.71 -0.0
1,538,394 + Rru_A1303 0.71 +0.6
1,538,395 - Rru_A1303 0.71 -0.8
1,538,395 - Rru_A1303 0.71 +0.3
1,538,970 + Rru_A1304 0.11 +1.3
1,538,970 + Rru_A1304 0.11 +0.6
1,538,970 + Rru_A1304 0.11 +0.6
1,538,970 + Rru_A1304 0.11 -1.0
1,538,971 - Rru_A1304 0.11 -1.0
1,538,971 - Rru_A1304 0.11 -0.6
1,538,971 - Rru_A1304 0.11 -0.0
1,538,971 - Rru_A1304 0.11 -0.0
1,539,163 - Rru_A1304 0.23 -0.0
1,539,192 + Rru_A1304 0.25 -0.0
1,539,192 + Rru_A1304 0.25 -0.0
1,539,192 + Rru_A1304 0.25 -0.0
1,539,193 - Rru_A1304 0.25 +0.7
1,539,193 - Rru_A1304 0.25 -0.0
1,539,193 - Rru_A1304 0.25 -0.0
1,539,193 - Rru_A1304 0.25 -0.0
1,539,225 + Rru_A1304 0.27 +0.7
1,539,225 + Rru_A1304 0.27 +0.2
1,539,225 + Rru_A1304 0.27 +0.3
1,539,225 + Rru_A1304 0.27 +0.3
1,539,225 + Rru_A1304 0.27 -0.0
1,539,225 + Rru_A1304 0.27 +0.2
1,539,226 - Rru_A1304 0.27 +1.2
1,539,226 - Rru_A1304 0.27 -0.0
1,539,226 - Rru_A1304 0.27 -1.6
1,539,226 - Rru_A1304 0.27 +0.6
1,539,226 - Rru_A1304 0.27 +1.1
1,539,226 - Rru_A1304 0.27 +0.2
1,539,258 + Rru_A1304 0.29 -0.0
1,539,259 - Rru_A1304 0.29 +0.1
1,539,308 + Rru_A1304 0.32 -0.0
1,539,308 + Rru_A1304 0.32 +0.3
1,539,408 + Rru_A1304 0.38 -0.3
1,539,408 + Rru_A1304 0.38 -0.2
1,539,409 - Rru_A1304 0.38 +2.0
1,539,600 + Rru_A1304 0.49 +0.4
1,539,601 - Rru_A1304 0.49 +0.1
1,539,601 - Rru_A1304 0.49 +0.3
1,539,601 - Rru_A1304 0.49 -0.0
1,539,748 - Rru_A1304 0.58 +2.0

Or see this region's nucleotide sequence