Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1276

Experiment: acetate; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate; Light intensity 9 uM
1,498,635	+				+0.3
1,498,717	+		Rru_A1274	0.19	-0.0
1,498,717	+		Rru_A1274	0.19	+0.6
1,498,717	+		Rru_A1274	0.19	-0.0
1,498,718	-		Rru_A1274	0.19	+0.9
1,498,718	-		Rru_A1274	0.19	-1.0
1,498,891	+		Rru_A1274	0.44	-1.0
1,498,942	-		Rru_A1274	0.51	-1.0
1,499,174	-		Rru_A1274	0.84	-0.0
1,499,287	+				+0.7
1,499,396	+		Rru_A1275	0.50	+0.3
1,499,397	-		Rru_A1275	0.50	+0.6
1,499,505	+				-1.0
1,499,505	+				-0.0
1,499,506	-				+0.5
1,499,599	+				-0.0
1,499,599	+				-0.0
1,499,599	+				+0.3
1,499,599	+				-0.0
1,499,600	-				-1.8
1,499,642	+				-1.0
1,499,642	+				+0.2
1,499,642	+				-0.4
1,499,642	+				-0.0
1,499,643	-				+0.4
1,499,644	+				-1.6
1,499,644	+				-0.5
1,499,644	+				-1.0
1,499,645	-				-0.0
1,499,645	-				-0.0
1,499,645	-				-0.0
1,499,645	-				-0.1
1,499,645	-				+0.1
1,499,645	-				-0.2
1,499,645	-				-0.6
1,499,722	+		Rru_A1276	0.10	-0.0
1,499,722	+		Rru_A1276	0.10	-0.5
1,499,722	+		Rru_A1276	0.10	-0.4
1,499,722	+		Rru_A1276	0.10	+0.2
1,499,722	+		Rru_A1276	0.10	-0.0
1,499,722	+		Rru_A1276	0.10	+0.3
1,499,722	+		Rru_A1276	0.10	-0.4
1,499,723	-		Rru_A1276	0.10	+0.6
1,499,723	-		Rru_A1276	0.10	-0.0
1,499,723	-		Rru_A1276	0.10	+1.0
1,499,723	-		Rru_A1276	0.10	-0.0
1,499,723	-		Rru_A1276	0.10	+0.2
1,499,723	-		Rru_A1276	0.10	-0.2
1,499,723	-		Rru_A1276	0.10	-0.0
1,499,723	-		Rru_A1276	0.10	-0.6
1,499,723	-		Rru_A1276	0.10	-0.0
1,499,747	+		Rru_A1276	0.11	+0.1
1,499,833	+		Rru_A1276	0.16	+0.0
1,499,833	+		Rru_A1276	0.16	+0.2
1,499,833	+		Rru_A1276	0.16	-1.0
1,499,834	-		Rru_A1276	0.16	-1.6
1,499,834	-		Rru_A1276	0.16	+0.3
1,499,834	-		Rru_A1276	0.16	+0.3
1,499,837	-		Rru_A1276	0.16	-0.3
1,499,905	+		Rru_A1276	0.19	+0.3
1,499,905	+		Rru_A1276	0.19	-0.4
1,499,939	+		Rru_A1276	0.21	-0.0
1,499,940	-		Rru_A1276	0.21	-1.0
1,499,941	+		Rru_A1276	0.21	-0.0
1,499,942	-		Rru_A1276	0.21	+0.5
1,499,942	-		Rru_A1276	0.21	-0.0
1,499,942	-		Rru_A1276	0.21	-1.2
1,499,942	-		Rru_A1276	0.21	+0.1
1,500,035	+		Rru_A1276	0.26	-0.2
1,500,036	-		Rru_A1276	0.26	-0.0
1,500,125	-		Rru_A1276	0.30	-0.0
1,500,134	+		Rru_A1276	0.31	-0.0
1,500,134	+		Rru_A1276	0.31	-0.0
1,500,135	-		Rru_A1276	0.31	-0.0
1,500,135	-		Rru_A1276	0.31	+0.8
1,500,135	-		Rru_A1276	0.31	+0.1
1,500,135	-		Rru_A1276	0.31	-1.0
1,500,135	-		Rru_A1276	0.31	+0.9
1,500,135	-		Rru_A1276	0.31	-1.0
1,500,260	+		Rru_A1276	0.37	+0.1
1,500,260	+		Rru_A1276	0.37	+0.2
1,500,262	+		Rru_A1276	0.37	+0.3
1,500,262	+		Rru_A1276	0.37	-0.0
1,500,262	+		Rru_A1276	0.37	-0.4
1,500,262	+		Rru_A1276	0.37	+0.5
1,500,262	+		Rru_A1276	0.37	-0.8
1,500,263	-		Rru_A1276	0.37	-0.4
1,500,434	-		Rru_A1276	0.45	-0.4
1,500,514	+		Rru_A1276	0.49	-0.0
1,500,514	+		Rru_A1276	0.49	-0.6
1,500,514	+		Rru_A1276	0.49	-0.0
1,500,514	+		Rru_A1276	0.49	-1.0
1,500,514	+		Rru_A1276	0.49	-1.0
1,500,514	+		Rru_A1276	0.49	-0.0
1,500,515	-		Rru_A1276	0.49	-0.0
1,500,515	-		Rru_A1276	0.49	+0.2
1,500,515	-		Rru_A1276	0.49	-0.9
1,500,515	-		Rru_A1276	0.49	+0.2
1,500,515	-		Rru_A1276	0.49	-0.0
1,500,515	-		Rru_A1276	0.49	-1.6
1,500,515	-		Rru_A1276	0.49	+1.3
1,500,575	+		Rru_A1276	0.52	-0.0
1,500,576	-		Rru_A1276	0.52	+1.6
1,500,576	-		Rru_A1276	0.52	-0.0
1,500,577	+		Rru_A1276	0.52	+0.3
1,500,577	+		Rru_A1276	0.52	+1.2
1,500,578	-		Rru_A1276	0.52	+0.1
1,500,578	-		Rru_A1276	0.52	-0.9
1,500,619	+		Rru_A1276	0.55	-0.0
1,500,619	+		Rru_A1276	0.55	-0.4
1,500,620	-		Rru_A1276	0.55	-0.0
1,500,620	-		Rru_A1276	0.55	-0.0
1,500,620	-		Rru_A1276	0.55	+0.1
1,500,705	-		Rru_A1276	0.59	-1.4
1,500,705	-		Rru_A1276	0.59	-0.0
1,500,746	+		Rru_A1276	0.61	-0.1
1,500,746	+		Rru_A1276	0.61	-0.0
1,500,748	+		Rru_A1276	0.61	-1.0
1,500,748	+		Rru_A1276	0.61	-1.1
1,500,749	-		Rru_A1276	0.61	+0.1
1,500,749	-		Rru_A1276	0.61	-0.2
1,500,784	+		Rru_A1276	0.63	+1.2
1,500,784	+		Rru_A1276	0.63	-0.0
1,500,784	+		Rru_A1276	0.63	-0.4
1,500,785	-		Rru_A1276	0.63	-0.8
1,500,785	-		Rru_A1276	0.63	-0.0
1,500,785	-		Rru_A1276	0.63	-0.4
1,500,820	+		Rru_A1276	0.64	-0.0
1,500,820	+		Rru_A1276	0.64	+0.1
1,500,820	+		Rru_A1276	0.64	+0.4
1,500,820	+		Rru_A1276	0.64	-0.0
1,500,821	-		Rru_A1276	0.64	-0.3
1,500,825	-		Rru_A1276	0.65	-0.0
1,500,997	+		Rru_A1276	0.73	+0.3
1,500,998	-		Rru_A1276	0.73	+0.3
1,501,088	-		Rru_A1276	0.78	+0.1
1,501,139	-		Rru_A1276	0.80	+1.2
1,501,139	-		Rru_A1276	0.80	-0.8
1,501,186	+		Rru_A1276	0.83	-0.2
1,501,186	+		Rru_A1276	0.83	-0.4
1,501,266	-		Rru_A1276	0.86	+1.0
1,501,266	-		Rru_A1276	0.86	+0.2
1,501,267	+		Rru_A1276	0.87	-0.0
1,501,267	+		Rru_A1276	0.87	+1.0
1,501,267	+		Rru_A1276	0.87	+0.5
1,501,267	+		Rru_A1276	0.87	+0.2
1,501,268	-		Rru_A1276	0.87	-0.0
1,501,268	-		Rru_A1276	0.87	-0.8
1,501,268	-		Rru_A1276	0.87	-2.0
1,501,268	-		Rru_A1276	0.87	+0.2
1,501,268	-		Rru_A1276	0.87	-0.0
1,501,616	-				-0.0
1,501,691	-				-0.0
1,501,895	-				+0.4
1,501,895	-				+0.4
1,501,900	-				-0.0
1,501,959	+				+0.5
1,501,968	+				+0.1
1,501,968	+				-1.6
1,501,968	+				-0.4
1,502,064	+				-1.0
1,502,082	+				+0.4
1,502,082	+				-0.3
1,502,082	+				+0.0
1,502,082	+				+0.5
1,502,082	+				+0.6
1,502,082	+				+0.8
1,502,082	+				-0.0
1,502,082	+				+0.3
1,502,083	-				-0.0
1,502,083	-				-0.0
1,502,083	-				-0.3
1,502,083	-				-0.0
1,502,083	-				-0.0
1,502,083	-				-0.0
1,502,084	+				-0.0
1,502,084	+				-0.2
1,502,084	+				-0.0
1,502,084	+				+0.6
1,502,084	+				+0.4
1,502,084	+				+0.7
1,502,085	-				-0.7
1,502,085	-				-0.9
1,502,085	-				-1.0
1,502,085	-				+0.2
1,502,085	-				-0.0
1,502,091	+				+0.6
1,502,091	+				-0.0
1,502,091	+				-0.0
1,502,091	+				-0.0
1,502,092	-				+0.1
1,502,093	+				+0.4
1,502,093	+				-0.0
1,502,093	+				-0.0
1,502,094	-				+0.7
1,502,094	-				-0.0
1,502,207	+				-0.0
1,502,207	+				+1.6
1,502,301	+		Rru_A1277	0.12	-0.0
1,502,301	+		Rru_A1277	0.12	+0.3
1,502,301	+		Rru_A1277	0.12	-0.0
1,502,388	+		Rru_A1277	0.16	+0.9
1,502,502	+		Rru_A1277	0.21	-0.0
1,502,502	+		Rru_A1277	0.21	+0.7
1,502,502	+		Rru_A1277	0.21	-0.1
1,502,502	+		Rru_A1277	0.21	-0.0
1,502,502	+		Rru_A1277	0.21	+0.5
1,502,503	-		Rru_A1277	0.21	+0.6
1,502,503	-		Rru_A1277	0.21	-1.0