Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1272 and Rru_A1273 are separated by 27 nucleotides Rru_A1273 and Rru_A1274 are separated by 145 nucleotides Rru_A1274 and Rru_A1275 are separated by 25 nucleotides
Rru_A1272: Rru_A1272 - Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor domain (NCBI), at 1,495,736 to 1,497,634
_A1272
Rru_A1273: Rru_A1273 - Alpha/beta hydrolase fold (NCBI), at 1,497,662 to 1,498,438
_A1273
Rru_A1274: Rru_A1274 - Radical SAM (NCBI), at 1,498,584 to 1,499,282
_A1274
Rru_A1275: Rru_A1275 - hypothetical protein (NCBI), at 1,499,308 to 1,499,484
_A1275
Position (kb) 1497
1498
1499 Strain fitness (log2 ratio) -1
0
1 at 1496.835 kb on + strand, within Rru_A1272 at 1496.836 kb on - strand, within Rru_A1272 at 1496.836 kb on - strand, within Rru_A1272 at 1496.836 kb on - strand, within Rru_A1272 at 1496.836 kb on - strand, within Rru_A1272 at 1496.836 kb on - strand, within Rru_A1272 at 1496.844 kb on - strand, within Rru_A1272 at 1496.878 kb on + strand, within Rru_A1272 at 1496.878 kb on + strand, within Rru_A1272 at 1496.879 kb on - strand, within Rru_A1272 at 1496.879 kb on - strand, within Rru_A1272 at 1496.897 kb on + strand, within Rru_A1272 at 1496.898 kb on - strand, within Rru_A1272 at 1497.177 kb on + strand, within Rru_A1272 at 1497.177 kb on + strand, within Rru_A1272 at 1497.177 kb on + strand, within Rru_A1272 at 1497.178 kb on - strand, within Rru_A1272 at 1497.178 kb on - strand, within Rru_A1272 at 1497.259 kb on + strand, within Rru_A1272 at 1497.259 kb on + strand, within Rru_A1272 at 1497.260 kb on - strand, within Rru_A1272 at 1497.260 kb on - strand, within Rru_A1272 at 1497.263 kb on + strand, within Rru_A1272 at 1497.263 kb on + strand, within Rru_A1272 at 1497.263 kb on + strand, within Rru_A1272 at 1497.263 kb on + strand, within Rru_A1272 at 1497.263 kb on + strand, within Rru_A1272 at 1497.263 kb on + strand, within Rru_A1272 at 1497.264 kb on - strand, within Rru_A1272 at 1497.264 kb on - strand, within Rru_A1272 at 1497.264 kb on - strand, within Rru_A1272 at 1497.264 kb on - strand, within Rru_A1272 at 1497.429 kb on + strand, within Rru_A1272 at 1497.430 kb on - strand, within Rru_A1272 at 1497.430 kb on - strand, within Rru_A1272 at 1497.563 kb on + strand at 1497.563 kb on + strand at 1497.563 kb on + strand at 1497.563 kb on + strand at 1497.564 kb on - strand at 1497.564 kb on - strand at 1497.882 kb on + strand, within Rru_A1273 at 1497.984 kb on + strand, within Rru_A1273 at 1497.984 kb on + strand, within Rru_A1273 at 1497.985 kb on - strand, within Rru_A1273 at 1498.512 kb on + strand at 1498.512 kb on + strand at 1498.513 kb on - strand at 1498.635 kb on + strand at 1498.717 kb on + strand, within Rru_A1274 at 1498.717 kb on + strand, within Rru_A1274 at 1498.717 kb on + strand, within Rru_A1274 at 1498.718 kb on - strand, within Rru_A1274 at 1498.718 kb on - strand, within Rru_A1274 at 1498.891 kb on + strand, within Rru_A1274 at 1498.942 kb on - strand, within Rru_A1274 at 1499.174 kb on - strand, within Rru_A1274 at 1499.287 kb on + strand at 1499.396 kb on + strand, within Rru_A1275 at 1499.397 kb on - strand, within Rru_A1275
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 1,496,835 + Rru_A1272 0.58 -1.6 1,496,836 - Rru_A1272 0.58 +0.3 1,496,836 - Rru_A1272 0.58 -0.5 1,496,836 - Rru_A1272 0.58 -0.0 1,496,836 - Rru_A1272 0.58 +0.0 1,496,836 - Rru_A1272 0.58 -0.0 1,496,844 - Rru_A1272 0.58 -0.0 1,496,878 + Rru_A1272 0.60 -0.8 1,496,878 + Rru_A1272 0.60 -0.0 1,496,879 - Rru_A1272 0.60 -0.0 1,496,879 - Rru_A1272 0.60 +0.7 1,496,897 + Rru_A1272 0.61 -0.0 1,496,898 - Rru_A1272 0.61 -0.0 1,497,177 + Rru_A1272 0.76 -0.0 1,497,177 + Rru_A1272 0.76 +1.0 1,497,177 + Rru_A1272 0.76 +0.9 1,497,178 - Rru_A1272 0.76 +0.2 1,497,178 - Rru_A1272 0.76 +0.4 1,497,259 + Rru_A1272 0.80 -0.0 1,497,259 + Rru_A1272 0.80 -0.0 1,497,260 - Rru_A1272 0.80 -0.0 1,497,260 - Rru_A1272 0.80 -0.0 1,497,263 + Rru_A1272 0.80 +0.9 1,497,263 + Rru_A1272 0.80 -0.0 1,497,263 + Rru_A1272 0.80 -0.0 1,497,263 + Rru_A1272 0.80 -0.2 1,497,263 + Rru_A1272 0.80 +0.8 1,497,263 + Rru_A1272 0.80 -0.6 1,497,264 - Rru_A1272 0.80 +0.2 1,497,264 - Rru_A1272 0.80 -0.0 1,497,264 - Rru_A1272 0.80 +0.3 1,497,264 - Rru_A1272 0.80 +0.6 1,497,429 + Rru_A1272 0.89 -0.0 1,497,430 - Rru_A1272 0.89 -0.0 1,497,430 - Rru_A1272 0.89 -0.1 1,497,563 + +1.6 1,497,563 + +0.3 1,497,563 + +0.1 1,497,563 + -0.1 1,497,564 - +0.1 1,497,564 - -0.0 1,497,882 + Rru_A1273 0.28 +0.8 1,497,984 + Rru_A1273 0.41 -0.4 1,497,984 + Rru_A1273 0.41 -0.2 1,497,985 - Rru_A1273 0.42 -0.0 1,498,512 + +0.1 1,498,512 + +0.8 1,498,513 - +0.8 1,498,635 + +0.3 1,498,717 + Rru_A1274 0.19 -0.0 1,498,717 + Rru_A1274 0.19 +0.6 1,498,717 + Rru_A1274 0.19 -0.0 1,498,718 - Rru_A1274 0.19 +0.9 1,498,718 - Rru_A1274 0.19 -1.0 1,498,891 + Rru_A1274 0.44 -1.0 1,498,942 - Rru_A1274 0.51 -1.0 1,499,174 - Rru_A1274 0.84 -0.0 1,499,287 + +0.7 1,499,396 + Rru_A1275 0.50 +0.3 1,499,397 - Rru_A1275 0.50 +0.6
Or see this region's nucleotide sequence