Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1262

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1260 and Rru_A1261 are separated by 85 nucleotidesRru_A1261 and Rru_A1262 overlap by 4 nucleotidesRru_A1262 and Rru_A1263 are separated by 42 nucleotidesRru_A1263 and Rru_A1264 are separated by 104 nucleotides Rru_A1260: Rru_A1260 - ABC transporter component (NCBI), at 1,480,963 to 1,482,081 _A1260 Rru_A1261: Rru_A1261 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 1,482,167 to 1,483,063 _A1261 Rru_A1262: Rru_A1262 - extracellular solute-binding protein, family 1 (NCBI), at 1,483,060 to 1,484,334 _A1262 Rru_A1263: Rru_A1263 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 1,484,377 to 1,485,186 _A1263 Rru_A1264: Rru_A1264 - Short-chain dehydrogenase/reductase SDR (NCBI), at 1,485,291 to 1,486,073 _A1264 Position (kb) 1483 1484 1485Strain fitness (log2 ratio) -1 0 1 2at 1482.070 kb on + strandat 1482.070 kb on + strandat 1482.070 kb on + strandat 1482.070 kb on + strandat 1482.070 kb on + strandat 1482.070 kb on + strandat 1482.070 kb on + strandat 1482.071 kb on - strandat 1482.196 kb on - strandat 1482.283 kb on - strand, within Rru_A1261at 1482.291 kb on + strand, within Rru_A1261at 1482.291 kb on + strand, within Rru_A1261at 1482.292 kb on - strand, within Rru_A1261at 1482.292 kb on - strand, within Rru_A1261at 1482.339 kb on + strand, within Rru_A1261at 1482.340 kb on - strand, within Rru_A1261at 1482.340 kb on - strand, within Rru_A1261at 1482.352 kb on - strand, within Rru_A1261at 1482.352 kb on - strand, within Rru_A1261at 1482.352 kb on - strand, within Rru_A1261at 1482.352 kb on - strand, within Rru_A1261at 1482.474 kb on + strand, within Rru_A1261at 1482.474 kb on + strand, within Rru_A1261at 1482.475 kb on - strand, within Rru_A1261at 1482.475 kb on - strand, within Rru_A1261at 1482.475 kb on - strand, within Rru_A1261at 1482.544 kb on + strand, within Rru_A1261at 1482.545 kb on - strand, within Rru_A1261at 1482.627 kb on + strand, within Rru_A1261at 1482.627 kb on + strand, within Rru_A1261at 1482.627 kb on + strand, within Rru_A1261at 1482.628 kb on - strand, within Rru_A1261at 1482.707 kb on + strand, within Rru_A1261at 1482.720 kb on + strand, within Rru_A1261at 1482.721 kb on - strand, within Rru_A1261at 1482.723 kb on + strand, within Rru_A1261at 1482.723 kb on + strand, within Rru_A1261at 1482.723 kb on + strand, within Rru_A1261at 1482.723 kb on + strand, within Rru_A1261at 1482.724 kb on - strand, within Rru_A1261at 1482.867 kb on + strand, within Rru_A1261at 1482.867 kb on + strand, within Rru_A1261at 1482.871 kb on + strand, within Rru_A1261at 1482.871 kb on + strand, within Rru_A1261at 1482.872 kb on - strand, within Rru_A1261at 1482.872 kb on - strand, within Rru_A1261at 1482.894 kb on + strand, within Rru_A1261at 1482.895 kb on - strand, within Rru_A1261at 1482.976 kb on + strandat 1482.976 kb on + strandat 1482.976 kb on + strandat 1482.976 kb on + strandat 1482.977 kb on - strandat 1482.977 kb on - strandat 1482.977 kb on - strandat 1482.977 kb on - strandat 1483.196 kb on + strand, within Rru_A1262at 1483.196 kb on + strand, within Rru_A1262at 1483.196 kb on + strand, within Rru_A1262at 1483.197 kb on - strand, within Rru_A1262at 1483.197 kb on - strand, within Rru_A1262at 1483.197 kb on - strand, within Rru_A1262at 1483.250 kb on + strand, within Rru_A1262at 1483.251 kb on - strand, within Rru_A1262at 1483.254 kb on - strand, within Rru_A1262at 1483.259 kb on + strand, within Rru_A1262at 1483.259 kb on + strand, within Rru_A1262at 1483.404 kb on + strand, within Rru_A1262at 1483.507 kb on - strand, within Rru_A1262at 1483.530 kb on + strand, within Rru_A1262at 1483.530 kb on + strand, within Rru_A1262at 1483.530 kb on + strand, within Rru_A1262at 1483.531 kb on - strand, within Rru_A1262at 1483.533 kb on - strand, within Rru_A1262at 1483.541 kb on + strand, within Rru_A1262at 1483.541 kb on + strand, within Rru_A1262at 1483.541 kb on + strand, within Rru_A1262at 1483.541 kb on + strand, within Rru_A1262at 1483.541 kb on + strand, within Rru_A1262at 1483.541 kb on + strand, within Rru_A1262at 1483.542 kb on - strand, within Rru_A1262at 1483.542 kb on - strand, within Rru_A1262at 1483.542 kb on - strand, within Rru_A1262at 1483.548 kb on - strand, within Rru_A1262at 1483.548 kb on - strand, within Rru_A1262at 1483.616 kb on + strand, within Rru_A1262at 1483.616 kb on + strand, within Rru_A1262at 1483.617 kb on - strand, within Rru_A1262at 1483.617 kb on - strand, within Rru_A1262at 1483.617 kb on - strand, within Rru_A1262at 1483.617 kb on - strand, within Rru_A1262at 1483.637 kb on + strand, within Rru_A1262at 1483.638 kb on - strand, within Rru_A1262at 1483.638 kb on - strand, within Rru_A1262at 1483.638 kb on - strand, within Rru_A1262at 1483.724 kb on + strand, within Rru_A1262at 1483.724 kb on + strand, within Rru_A1262at 1483.871 kb on + strand, within Rru_A1262at 1483.872 kb on - strand, within Rru_A1262at 1483.913 kb on + strand, within Rru_A1262at 1483.913 kb on + strand, within Rru_A1262at 1483.932 kb on - strand, within Rru_A1262at 1483.932 kb on - strand, within Rru_A1262at 1483.932 kb on - strand, within Rru_A1262at 1483.935 kb on + strand, within Rru_A1262at 1483.936 kb on - strand, within Rru_A1262at 1483.936 kb on - strand, within Rru_A1262at 1483.937 kb on + strand, within Rru_A1262at 1483.937 kb on + strand, within Rru_A1262at 1483.937 kb on + strand, within Rru_A1262at 1483.938 kb on - strand, within Rru_A1262at 1483.950 kb on + strand, within Rru_A1262at 1483.950 kb on + strand, within Rru_A1262at 1483.950 kb on + strand, within Rru_A1262at 1483.950 kb on + strand, within Rru_A1262at 1483.950 kb on + strand, within Rru_A1262at 1483.952 kb on + strand, within Rru_A1262at 1483.952 kb on + strand, within Rru_A1262at 1483.952 kb on + strand, within Rru_A1262at 1483.953 kb on - strand, within Rru_A1262at 1483.953 kb on - strand, within Rru_A1262at 1483.953 kb on - strand, within Rru_A1262at 1483.953 kb on - strand, within Rru_A1262at 1483.953 kb on - strand, within Rru_A1262at 1483.953 kb on - strand, within Rru_A1262at 1484.000 kb on + strand, within Rru_A1262at 1484.000 kb on + strand, within Rru_A1262at 1484.000 kb on + strand, within Rru_A1262at 1484.000 kb on + strand, within Rru_A1262at 1484.000 kb on + strand, within Rru_A1262at 1484.001 kb on - strand, within Rru_A1262at 1484.084 kb on + strand, within Rru_A1262at 1484.108 kb on + strand, within Rru_A1262at 1484.232 kb on - strandat 1484.318 kb on + strandat 1484.318 kb on + strandat 1484.319 kb on - strandat 1484.319 kb on - strandat 1484.378 kb on + strandat 1484.379 kb on - strandat 1484.415 kb on - strandat 1484.425 kb on + strandat 1484.458 kb on + strand, within Rru_A1263at 1484.461 kb on + strand, within Rru_A1263at 1484.461 kb on + strand, within Rru_A1263at 1484.547 kb on - strand, within Rru_A1263at 1484.547 kb on - strand, within Rru_A1263at 1484.922 kb on - strand, within Rru_A1263at 1484.950 kb on + strand, within Rru_A1263at 1485.008 kb on + strand, within Rru_A1263at 1485.009 kb on - strand, within Rru_A1263at 1485.029 kb on + strand, within Rru_A1263at 1485.030 kb on - strand, within Rru_A1263at 1485.030 kb on - strand, within Rru_A1263at 1485.030 kb on - strand, within Rru_A1263at 1485.292 kb on + strandat 1485.293 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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1,482,070 + -0.0
1,482,070 + +0.7
1,482,070 + -0.0
1,482,070 + -0.0
1,482,070 + -1.0
1,482,070 + -0.0
1,482,070 + +0.6
1,482,071 - +0.1
1,482,196 - +0.6
1,482,283 - Rru_A1261 0.13 +0.6
1,482,291 + Rru_A1261 0.14 -0.0
1,482,291 + Rru_A1261 0.14 -1.0
1,482,292 - Rru_A1261 0.14 +0.7
1,482,292 - Rru_A1261 0.14 -0.0
1,482,339 + Rru_A1261 0.19 -0.0
1,482,340 - Rru_A1261 0.19 -0.3
1,482,340 - Rru_A1261 0.19 -0.0
1,482,352 - Rru_A1261 0.21 +0.2
1,482,352 - Rru_A1261 0.21 -0.0
1,482,352 - Rru_A1261 0.21 -0.0
1,482,352 - Rru_A1261 0.21 -0.0
1,482,474 + Rru_A1261 0.34 +0.1
1,482,474 + Rru_A1261 0.34 +1.3
1,482,475 - Rru_A1261 0.34 +0.2
1,482,475 - Rru_A1261 0.34 +0.8
1,482,475 - Rru_A1261 0.34 -0.0
1,482,544 + Rru_A1261 0.42 +1.1
1,482,545 - Rru_A1261 0.42 -0.0
1,482,627 + Rru_A1261 0.51 +0.8
1,482,627 + Rru_A1261 0.51 +0.7
1,482,627 + Rru_A1261 0.51 +1.2
1,482,628 - Rru_A1261 0.51 +0.6
1,482,707 + Rru_A1261 0.60 +0.4
1,482,720 + Rru_A1261 0.62 -0.0
1,482,721 - Rru_A1261 0.62 -0.0
1,482,723 + Rru_A1261 0.62 -0.0
1,482,723 + Rru_A1261 0.62 +1.0
1,482,723 + Rru_A1261 0.62 -1.0
1,482,723 + Rru_A1261 0.62 +0.5
1,482,724 - Rru_A1261 0.62 -0.0
1,482,867 + Rru_A1261 0.78 -0.0
1,482,867 + Rru_A1261 0.78 +0.5
1,482,871 + Rru_A1261 0.78 +1.5
1,482,871 + Rru_A1261 0.78 +0.6
1,482,872 - Rru_A1261 0.79 -1.5
1,482,872 - Rru_A1261 0.79 -0.1
1,482,894 + Rru_A1261 0.81 -0.0
1,482,895 - Rru_A1261 0.81 -0.5
1,482,976 + +0.6
1,482,976 + -0.0
1,482,976 + +0.0
1,482,976 + +1.9
1,482,977 - -0.0
1,482,977 - +1.0
1,482,977 - -0.0
1,482,977 - -1.6
1,483,196 + Rru_A1262 0.11 -1.6
1,483,196 + Rru_A1262 0.11 -0.0
1,483,196 + Rru_A1262 0.11 -0.2
1,483,197 - Rru_A1262 0.11 +1.2
1,483,197 - Rru_A1262 0.11 +0.8
1,483,197 - Rru_A1262 0.11 -0.0
1,483,250 + Rru_A1262 0.15 +1.5
1,483,251 - Rru_A1262 0.15 +0.6
1,483,254 - Rru_A1262 0.15 +0.0
1,483,259 + Rru_A1262 0.16 -0.1
1,483,259 + Rru_A1262 0.16 -0.0
1,483,404 + Rru_A1262 0.27 -1.5
1,483,507 - Rru_A1262 0.35 +0.5
1,483,530 + Rru_A1262 0.37 +0.8
1,483,530 + Rru_A1262 0.37 +0.8
1,483,530 + Rru_A1262 0.37 -0.0
1,483,531 - Rru_A1262 0.37 -0.2
1,483,533 - Rru_A1262 0.37 -0.0
1,483,541 + Rru_A1262 0.38 +1.0
1,483,541 + Rru_A1262 0.38 +0.8
1,483,541 + Rru_A1262 0.38 -1.0
1,483,541 + Rru_A1262 0.38 +0.9
1,483,541 + Rru_A1262 0.38 +0.7
1,483,541 + Rru_A1262 0.38 +0.4
1,483,542 - Rru_A1262 0.38 -0.0
1,483,542 - Rru_A1262 0.38 +0.7
1,483,542 - Rru_A1262 0.38 -0.0
1,483,548 - Rru_A1262 0.38 +0.5
1,483,548 - Rru_A1262 0.38 +0.3
1,483,616 + Rru_A1262 0.44 +0.7
1,483,616 + Rru_A1262 0.44 -0.4
1,483,617 - Rru_A1262 0.44 +1.4
1,483,617 - Rru_A1262 0.44 +0.0
1,483,617 - Rru_A1262 0.44 -0.0
1,483,617 - Rru_A1262 0.44 +0.3
1,483,637 + Rru_A1262 0.45 +1.1
1,483,638 - Rru_A1262 0.45 -0.3
1,483,638 - Rru_A1262 0.45 +1.1
1,483,638 - Rru_A1262 0.45 +0.1
1,483,724 + Rru_A1262 0.52 +0.1
1,483,724 + Rru_A1262 0.52 +0.1
1,483,871 + Rru_A1262 0.64 -0.0
1,483,872 - Rru_A1262 0.64 -1.0
1,483,913 + Rru_A1262 0.67 -1.0
1,483,913 + Rru_A1262 0.67 +0.4
1,483,932 - Rru_A1262 0.68 -0.0
1,483,932 - Rru_A1262 0.68 -0.5
1,483,932 - Rru_A1262 0.68 +0.4
1,483,935 + Rru_A1262 0.69 +1.2
1,483,936 - Rru_A1262 0.69 -0.0
1,483,936 - Rru_A1262 0.69 +0.3
1,483,937 + Rru_A1262 0.69 -0.0
1,483,937 + Rru_A1262 0.69 +0.8
1,483,937 + Rru_A1262 0.69 -0.0
1,483,938 - Rru_A1262 0.69 +0.5
1,483,950 + Rru_A1262 0.70 +0.5
1,483,950 + Rru_A1262 0.70 +1.6
1,483,950 + Rru_A1262 0.70 -0.0
1,483,950 + Rru_A1262 0.70 +0.7
1,483,950 + Rru_A1262 0.70 +1.0
1,483,952 + Rru_A1262 0.70 +1.1
1,483,952 + Rru_A1262 0.70 -0.0
1,483,952 + Rru_A1262 0.70 +1.8
1,483,953 - Rru_A1262 0.70 +0.2
1,483,953 - Rru_A1262 0.70 -0.0
1,483,953 - Rru_A1262 0.70 +0.4
1,483,953 - Rru_A1262 0.70 +0.2
1,483,953 - Rru_A1262 0.70 -1.0
1,483,953 - Rru_A1262 0.70 +1.6
1,484,000 + Rru_A1262 0.74 -0.0
1,484,000 + Rru_A1262 0.74 +0.1
1,484,000 + Rru_A1262 0.74 -1.0
1,484,000 + Rru_A1262 0.74 -0.0
1,484,000 + Rru_A1262 0.74 -0.2
1,484,001 - Rru_A1262 0.74 +0.4
1,484,084 + Rru_A1262 0.80 +0.0
1,484,108 + Rru_A1262 0.82 +0.5
1,484,232 - +0.1
1,484,318 + -0.0
1,484,318 + -0.5
1,484,319 - -0.0
1,484,319 - +0.4
1,484,378 + +0.5
1,484,379 - -0.0
1,484,415 - +0.9
1,484,425 + -0.0
1,484,458 + Rru_A1263 0.10 +1.0
1,484,461 + Rru_A1263 0.10 +0.3
1,484,461 + Rru_A1263 0.10 +0.5
1,484,547 - Rru_A1263 0.21 -0.0
1,484,547 - Rru_A1263 0.21 +0.4
1,484,922 - Rru_A1263 0.67 +0.7
1,484,950 + Rru_A1263 0.71 +0.7
1,485,008 + Rru_A1263 0.78 +0.4
1,485,009 - Rru_A1263 0.78 +0.2
1,485,029 + Rru_A1263 0.80 -0.0
1,485,030 - Rru_A1263 0.81 -1.0
1,485,030 - Rru_A1263 0.81 -0.4
1,485,030 - Rru_A1263 0.81 +1.5
1,485,292 + -1.0
1,485,293 - +0.1

Or see this region's nucleotide sequence