Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1258

Experiment: acetate; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate; Light intensity 9 uM
1,478,874	+		Rru_A1257	0.42	+0.2
1,478,874	+		Rru_A1257	0.42	-0.0
1,478,874	+		Rru_A1257	0.42	-0.9
1,478,874	+		Rru_A1257	0.42	-0.0
1,478,874	+		Rru_A1257	0.42	-0.0
1,478,874	+		Rru_A1257	0.42	+0.3
1,478,875	-		Rru_A1257	0.42	-0.0
1,478,961	+		Rru_A1257	0.50	+0.3
1,478,993	-		Rru_A1257	0.53	-0.0
1,479,084	+		Rru_A1257	0.61	-0.7
1,479,084	+		Rru_A1257	0.61	-0.0
1,479,084	+		Rru_A1257	0.61	-0.4
1,479,084	+		Rru_A1257	0.61	+0.1
1,479,085	-		Rru_A1257	0.61	-0.0
1,479,173	+		Rru_A1257	0.69	+1.1
1,479,174	-		Rru_A1257	0.70	-0.0
1,479,229	+		Rru_A1257	0.75	-0.4
1,479,290	+		Rru_A1257	0.80	-0.5
1,479,291	-		Rru_A1257	0.80	+0.5
1,479,482	-				-0.2
1,479,497	+				-0.2
1,479,499	+				-0.0
1,479,504	-				-0.6
1,479,535	+				-0.0
1,479,580	+				-0.0
1,479,581	-				-0.0
1,479,694	-				-0.0
1,479,694	-				-0.0
1,479,769	-				-0.0
1,479,794	-				+0.2
1,479,794	-				-0.0
1,479,794	-				-0.1
1,479,806	-				+1.4
1,479,839	+				+0.3
1,479,844	+				-0.1
1,479,863	+				+0.6
1,479,863	+				-0.0
1,479,864	-				-0.0
1,479,864	-				-0.4
1,479,866	+				-0.0
1,479,866	+				-0.0
1,479,867	-				-0.2
1,479,867	-				+1.0
1,479,872	+				-0.0
1,480,316	+		Rru_A1258	0.64	-0.2
1,480,433	+		Rru_A1258	0.80	-0.0
1,480,844	+				-0.0
1,480,844	+				+0.4
1,480,845	-				-0.0
1,480,845	-				+0.6
1,480,845	-				+0.5
1,480,987	+				-0.0
1,480,987	+				+0.6
1,480,988	-				-0.0
1,480,988	-				+0.6
1,480,988	-				-0.0
1,480,988	-				-0.0
1,480,988	-				+0.5
1,481,030	+				-0.0
1,481,030	+				-0.0
1,481,031	-				-0.0
1,481,031	-				+0.7
1,481,264	+		Rru_A1260	0.27	-0.0
1,481,264	+		Rru_A1260	0.27	+1.3
1,481,264	+		Rru_A1260	0.27	+1.1
1,481,264	+		Rru_A1260	0.27	-0.0
1,481,264	+		Rru_A1260	0.27	-0.0
1,481,265	-		Rru_A1260	0.27	-0.0
1,481,265	-		Rru_A1260	0.27	-0.1
1,481,265	-		Rru_A1260	0.27	-0.7