Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1252

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1250 and Rru_A1251 are separated by 90 nucleotidesRru_A1251 and Rru_A1252 are separated by 11 nucleotidesRru_A1252 and Rru_A1253 are separated by 110 nucleotides Rru_A1250: Rru_A1250 - Beta-lactamase (NCBI), at 1,470,766 to 1,471,782 _A1250 Rru_A1251: Rru_A1251 - hypothetical protein (NCBI), at 1,471,873 to 1,472,349 _A1251 Rru_A1252: Rru_A1252 - Glutamate--ammonia ligase (NCBI), at 1,472,361 to 1,473,713 _A1252 Rru_A1253: Rru_A1253 - Glutamine synthetase, catalytic region (NCBI), at 1,473,824 to 1,475,188 _A1253 Position (kb) 1472 1473 1474Strain fitness (log2 ratio) -1 0 1 2at 1471.393 kb on + strand, within Rru_A1250at 1471.394 kb on - strand, within Rru_A1250at 1471.394 kb on - strand, within Rru_A1250at 1471.453 kb on + strand, within Rru_A1250at 1471.564 kb on + strand, within Rru_A1250at 1471.565 kb on - strand, within Rru_A1250at 1471.565 kb on - strand, within Rru_A1250at 1471.565 kb on - strand, within Rru_A1250at 1471.565 kb on - strand, within Rru_A1250at 1471.606 kb on + strand, within Rru_A1250at 1471.607 kb on - strand, within Rru_A1250at 1471.607 kb on - strand, within Rru_A1250at 1471.636 kb on + strand, within Rru_A1250at 1471.637 kb on - strand, within Rru_A1250at 1471.780 kb on + strandat 1471.814 kb on + strandat 1471.814 kb on + strandat 1471.814 kb on + strandat 1471.814 kb on + strandat 1471.814 kb on + strandat 1471.814 kb on + strandat 1471.814 kb on + strandat 1471.815 kb on - strandat 1471.815 kb on - strandat 1472.281 kb on + strand, within Rru_A1251at 1472.281 kb on + strand, within Rru_A1251at 1472.281 kb on + strand, within Rru_A1251at 1472.282 kb on - strand, within Rru_A1251at 1472.339 kb on - strandat 1472.357 kb on + strandat 1472.358 kb on - strandat 1472.358 kb on - strandat 1472.362 kb on + strandat 1472.362 kb on + strandat 1472.362 kb on + strandat 1472.363 kb on - strandat 1472.363 kb on - strandat 1472.363 kb on - strandat 1472.363 kb on - strandat 1472.363 kb on - strandat 1472.551 kb on + strand, within Rru_A1252at 1472.608 kb on + strand, within Rru_A1252at 1472.608 kb on + strand, within Rru_A1252at 1472.608 kb on + strand, within Rru_A1252at 1472.608 kb on + strand, within Rru_A1252at 1472.609 kb on - strand, within Rru_A1252at 1472.609 kb on - strand, within Rru_A1252at 1472.641 kb on + strand, within Rru_A1252at 1472.642 kb on - strand, within Rru_A1252at 1472.734 kb on + strand, within Rru_A1252at 1472.735 kb on - strand, within Rru_A1252at 1472.849 kb on + strand, within Rru_A1252at 1472.849 kb on + strand, within Rru_A1252at 1472.849 kb on + strand, within Rru_A1252at 1472.850 kb on - strand, within Rru_A1252at 1472.850 kb on - strand, within Rru_A1252at 1472.850 kb on - strand, within Rru_A1252at 1472.851 kb on + strand, within Rru_A1252at 1472.852 kb on - strand, within Rru_A1252at 1472.852 kb on - strand, within Rru_A1252at 1472.936 kb on + strand, within Rru_A1252at 1472.936 kb on + strand, within Rru_A1252at 1472.936 kb on + strand, within Rru_A1252at 1472.936 kb on + strand, within Rru_A1252at 1472.936 kb on + strand, within Rru_A1252at 1472.936 kb on + strand, within Rru_A1252at 1472.936 kb on + strand, within Rru_A1252at 1472.936 kb on + strand, within Rru_A1252at 1472.936 kb on + strand, within Rru_A1252at 1472.937 kb on - strand, within Rru_A1252at 1472.937 kb on - strand, within Rru_A1252at 1472.937 kb on - strand, within Rru_A1252at 1472.989 kb on + strand, within Rru_A1252at 1472.989 kb on + strand, within Rru_A1252at 1472.989 kb on + strand, within Rru_A1252at 1472.990 kb on - strand, within Rru_A1252at 1472.990 kb on - strand, within Rru_A1252at 1472.990 kb on - strand, within Rru_A1252at 1472.990 kb on - strand, within Rru_A1252at 1472.990 kb on - strand, within Rru_A1252at 1473.154 kb on + strand, within Rru_A1252at 1473.154 kb on + strand, within Rru_A1252at 1473.154 kb on + strand, within Rru_A1252at 1473.155 kb on - strand, within Rru_A1252at 1473.155 kb on - strand, within Rru_A1252at 1473.155 kb on - strand, within Rru_A1252at 1473.155 kb on - strand, within Rru_A1252at 1473.155 kb on - strand, within Rru_A1252at 1473.155 kb on - strand, within Rru_A1252at 1473.155 kb on - strand, within Rru_A1252at 1473.155 kb on - strand, within Rru_A1252at 1473.155 kb on - strand, within Rru_A1252at 1473.159 kb on - strand, within Rru_A1252at 1473.159 kb on - strand, within Rru_A1252at 1473.159 kb on - strand, within Rru_A1252at 1473.159 kb on - strand, within Rru_A1252at 1473.202 kb on + strand, within Rru_A1252at 1473.202 kb on + strand, within Rru_A1252at 1473.202 kb on + strand, within Rru_A1252at 1473.203 kb on - strand, within Rru_A1252at 1473.203 kb on - strand, within Rru_A1252at 1473.289 kb on + strand, within Rru_A1252at 1473.290 kb on - strand, within Rru_A1252at 1473.337 kb on + strand, within Rru_A1252at 1473.337 kb on + strand, within Rru_A1252at 1473.401 kb on + strand, within Rru_A1252at 1473.402 kb on - strand, within Rru_A1252at 1473.402 kb on - strand, within Rru_A1252at 1473.402 kb on - strand, within Rru_A1252at 1473.403 kb on + strand, within Rru_A1252at 1473.404 kb on - strand, within Rru_A1252at 1473.456 kb on + strand, within Rru_A1252at 1473.456 kb on + strand, within Rru_A1252at 1473.456 kb on + strand, within Rru_A1252at 1473.456 kb on + strand, within Rru_A1252at 1473.457 kb on - strand, within Rru_A1252at 1473.457 kb on - strand, within Rru_A1252at 1473.457 kb on - strand, within Rru_A1252at 1473.722 kb on + strandat 1473.722 kb on + strandat 1473.730 kb on + strandat 1473.730 kb on + strandat 1473.805 kb on + strandat 1473.806 kb on - strandat 1473.831 kb on + strandat 1473.831 kb on + strandat 1473.900 kb on + strandat 1473.900 kb on + strandat 1473.901 kb on - strandat 1473.901 kb on - strandat 1473.977 kb on - strand, within Rru_A1253at 1473.977 kb on - strand, within Rru_A1253at 1473.977 kb on - strand, within Rru_A1253at 1473.977 kb on - strand, within Rru_A1253at 1473.977 kb on - strand, within Rru_A1253at 1474.054 kb on - strand, within Rru_A1253at 1474.207 kb on + strand, within Rru_A1253at 1474.208 kb on - strand, within Rru_A1253at 1474.405 kb on - strand, within Rru_A1253at 1474.530 kb on + strand, within Rru_A1253at 1474.530 kb on + strand, within Rru_A1253at 1474.530 kb on + strand, within Rru_A1253at 1474.531 kb on - strand, within Rru_A1253at 1474.531 kb on - strand, within Rru_A1253at 1474.639 kb on + strand, within Rru_A1253at 1474.639 kb on + strand, within Rru_A1253at 1474.639 kb on + strand, within Rru_A1253

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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1,471,393 + Rru_A1250 0.62 -0.0
1,471,394 - Rru_A1250 0.62 +0.3
1,471,394 - Rru_A1250 0.62 -0.0
1,471,453 + Rru_A1250 0.68 +0.9
1,471,564 + Rru_A1250 0.78 -0.0
1,471,565 - Rru_A1250 0.79 -0.0
1,471,565 - Rru_A1250 0.79 +0.1
1,471,565 - Rru_A1250 0.79 +0.4
1,471,565 - Rru_A1250 0.79 +0.9
1,471,606 + Rru_A1250 0.83 +0.3
1,471,607 - Rru_A1250 0.83 -0.0
1,471,607 - Rru_A1250 0.83 -0.3
1,471,636 + Rru_A1250 0.86 +0.7
1,471,637 - Rru_A1250 0.86 +0.3
1,471,780 + +0.4
1,471,814 + +0.2
1,471,814 + +0.6
1,471,814 + -0.0
1,471,814 + +1.1
1,471,814 + +0.1
1,471,814 + +1.8
1,471,814 + +0.2
1,471,815 - +0.6
1,471,815 - +0.5
1,472,281 + Rru_A1251 0.86 +2.1
1,472,281 + Rru_A1251 0.86 +0.0
1,472,281 + Rru_A1251 0.86 +0.4
1,472,282 - Rru_A1251 0.86 +0.8
1,472,339 - -0.0
1,472,357 + -0.1
1,472,358 - +0.4
1,472,358 - -0.6
1,472,362 + +0.7
1,472,362 + -0.4
1,472,362 + -0.0
1,472,363 - -0.0
1,472,363 - +0.5
1,472,363 - -0.0
1,472,363 - +0.9
1,472,363 - -0.3
1,472,551 + Rru_A1252 0.14 -0.0
1,472,608 + Rru_A1252 0.18 -0.0
1,472,608 + Rru_A1252 0.18 +0.5
1,472,608 + Rru_A1252 0.18 -0.0
1,472,608 + Rru_A1252 0.18 -0.0
1,472,609 - Rru_A1252 0.18 +0.8
1,472,609 - Rru_A1252 0.18 -0.4
1,472,641 + Rru_A1252 0.21 -0.0
1,472,642 - Rru_A1252 0.21 -0.8
1,472,734 + Rru_A1252 0.28 +0.0
1,472,735 - Rru_A1252 0.28 +0.1
1,472,849 + Rru_A1252 0.36 +1.0
1,472,849 + Rru_A1252 0.36 -0.0
1,472,849 + Rru_A1252 0.36 +0.6
1,472,850 - Rru_A1252 0.36 -0.0
1,472,850 - Rru_A1252 0.36 -0.0
1,472,850 - Rru_A1252 0.36 +0.1
1,472,851 + Rru_A1252 0.36 -1.0
1,472,852 - Rru_A1252 0.36 +0.4
1,472,852 - Rru_A1252 0.36 -0.0
1,472,936 + Rru_A1252 0.42 -0.0
1,472,936 + Rru_A1252 0.42 +0.9
1,472,936 + Rru_A1252 0.42 +0.7
1,472,936 + Rru_A1252 0.42 -0.0
1,472,936 + Rru_A1252 0.42 +0.6
1,472,936 + Rru_A1252 0.42 +0.3
1,472,936 + Rru_A1252 0.42 -0.0
1,472,936 + Rru_A1252 0.42 +0.8
1,472,936 + Rru_A1252 0.42 +1.3
1,472,937 - Rru_A1252 0.43 +0.9
1,472,937 - Rru_A1252 0.43 -0.0
1,472,937 - Rru_A1252 0.43 -1.0
1,472,989 + Rru_A1252 0.46 +0.3
1,472,989 + Rru_A1252 0.46 -0.0
1,472,989 + Rru_A1252 0.46 -0.1
1,472,990 - Rru_A1252 0.46 +0.6
1,472,990 - Rru_A1252 0.46 -0.0
1,472,990 - Rru_A1252 0.46 +0.2
1,472,990 - Rru_A1252 0.46 -0.0
1,472,990 - Rru_A1252 0.46 +0.2
1,473,154 + Rru_A1252 0.59 +0.5
1,473,154 + Rru_A1252 0.59 -0.0
1,473,154 + Rru_A1252 0.59 -1.0
1,473,155 - Rru_A1252 0.59 +0.7
1,473,155 - Rru_A1252 0.59 -0.4
1,473,155 - Rru_A1252 0.59 -0.0
1,473,155 - Rru_A1252 0.59 -0.6
1,473,155 - Rru_A1252 0.59 +1.5
1,473,155 - Rru_A1252 0.59 -0.7
1,473,155 - Rru_A1252 0.59 -0.0
1,473,155 - Rru_A1252 0.59 -0.2
1,473,155 - Rru_A1252 0.59 +0.4
1,473,159 - Rru_A1252 0.59 -0.0
1,473,159 - Rru_A1252 0.59 -1.0
1,473,159 - Rru_A1252 0.59 -0.9
1,473,159 - Rru_A1252 0.59 +0.1
1,473,202 + Rru_A1252 0.62 -0.0
1,473,202 + Rru_A1252 0.62 -0.1
1,473,202 + Rru_A1252 0.62 -0.0
1,473,203 - Rru_A1252 0.62 -0.0
1,473,203 - Rru_A1252 0.62 -0.0
1,473,289 + Rru_A1252 0.69 +0.1
1,473,290 - Rru_A1252 0.69 +0.1
1,473,337 + Rru_A1252 0.72 +0.6
1,473,337 + Rru_A1252 0.72 +0.6
1,473,401 + Rru_A1252 0.77 +1.1
1,473,402 - Rru_A1252 0.77 -0.4
1,473,402 - Rru_A1252 0.77 +0.2
1,473,402 - Rru_A1252 0.77 -0.0
1,473,403 + Rru_A1252 0.77 -0.0
1,473,404 - Rru_A1252 0.77 +0.5
1,473,456 + Rru_A1252 0.81 +0.5
1,473,456 + Rru_A1252 0.81 -0.0
1,473,456 + Rru_A1252 0.81 +0.5
1,473,456 + Rru_A1252 0.81 +0.8
1,473,457 - Rru_A1252 0.81 +0.1
1,473,457 - Rru_A1252 0.81 -0.6
1,473,457 - Rru_A1252 0.81 +0.9
1,473,722 + +0.7
1,473,722 + +1.7
1,473,730 + -1.0
1,473,730 + -0.0
1,473,805 + -0.0
1,473,806 - -0.0
1,473,831 + +1.7
1,473,831 + +0.5
1,473,900 + -0.0
1,473,900 + -0.0
1,473,901 - +0.9
1,473,901 - -0.0
1,473,977 - Rru_A1253 0.11 -0.0
1,473,977 - Rru_A1253 0.11 +0.6
1,473,977 - Rru_A1253 0.11 +1.2
1,473,977 - Rru_A1253 0.11 -0.0
1,473,977 - Rru_A1253 0.11 -0.0
1,474,054 - Rru_A1253 0.17 -0.0
1,474,207 + Rru_A1253 0.28 +0.5
1,474,208 - Rru_A1253 0.28 +0.5
1,474,405 - Rru_A1253 0.43 -0.0
1,474,530 + Rru_A1253 0.52 +0.1
1,474,530 + Rru_A1253 0.52 -0.1
1,474,530 + Rru_A1253 0.52 +1.0
1,474,531 - Rru_A1253 0.52 +0.4
1,474,531 - Rru_A1253 0.52 -0.0
1,474,639 + Rru_A1253 0.60 +0.7
1,474,639 + Rru_A1253 0.60 -0.0
1,474,639 + Rru_A1253 0.60 -0.0

Or see this region's nucleotide sequence