Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1191

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1189 and Rru_A1190 are separated by 74 nucleotidesRru_A1190 and Rru_A1191 are separated by 86 nucleotidesRru_A1191 and Rru_A1192 are separated by 132 nucleotidesRru_A1192 and Rru_A1193 are separated by 76 nucleotides Rru_A1189: Rru_A1189 - 3-isopropylmalate dehydratase large subunit region (NCBI), at 1,406,192 to 1,407,610 _A1189 Rru_A1190: Rru_A1190 - 3-isopropylmalate dehydratase small subunit region (NCBI), at 1,407,685 to 1,408,308 _A1190 Rru_A1191: Rru_A1191 - 3-isopropylmalate dehydrogenase (NCBI), at 1,408,395 to 1,409,507 _A1191 Rru_A1192: Rru_A1192 - Ubiquinol-cytochrome c reductase, iron-sulfur subunit (NCBI), at 1,409,640 to 1,410,206 _A1192 Rru_A1193: Rru_A1193 - Dinitrogenase iron-molybdenum cofactor biosynthesis (NCBI), at 1,410,283 to 1,410,705 _A1193 Position (kb) 1408 1409 1410Strain fitness (log2 ratio) -3 -2 -1 0 1at 1407.999 kb on + strand, within Rru_A1190at 1408.213 kb on - strand, within Rru_A1190at 1408.348 kb on + strandat 1408.349 kb on - strandat 1408.543 kb on - strand, within Rru_A1191at 1408.662 kb on - strand, within Rru_A1191at 1408.824 kb on + strand, within Rru_A1191at 1408.825 kb on - strand, within Rru_A1191at 1408.894 kb on - strand, within Rru_A1191at 1408.894 kb on - strand, within Rru_A1191at 1408.894 kb on - strand, within Rru_A1191at 1409.040 kb on + strand, within Rru_A1191at 1409.063 kb on + strand, within Rru_A1191at 1409.063 kb on + strand, within Rru_A1191at 1409.063 kb on + strand, within Rru_A1191at 1409.064 kb on - strand, within Rru_A1191at 1409.064 kb on - strand, within Rru_A1191at 1409.064 kb on - strand, within Rru_A1191at 1409.064 kb on - strand, within Rru_A1191at 1409.064 kb on - strand, within Rru_A1191at 1409.067 kb on + strand, within Rru_A1191at 1409.067 kb on + strand, within Rru_A1191at 1409.067 kb on + strand, within Rru_A1191at 1409.067 kb on + strand, within Rru_A1191at 1409.067 kb on + strand, within Rru_A1191at 1409.067 kb on + strand, within Rru_A1191at 1409.068 kb on - strand, within Rru_A1191at 1409.068 kb on - strand, within Rru_A1191at 1409.068 kb on - strand, within Rru_A1191at 1409.068 kb on - strand, within Rru_A1191at 1409.068 kb on - strand, within Rru_A1191at 1409.068 kb on - strand, within Rru_A1191at 1409.068 kb on - strand, within Rru_A1191at 1409.076 kb on - strand, within Rru_A1191at 1409.247 kb on + strand, within Rru_A1191at 1409.247 kb on + strand, within Rru_A1191at 1409.247 kb on + strand, within Rru_A1191at 1409.247 kb on + strand, within Rru_A1191at 1409.247 kb on + strand, within Rru_A1191at 1409.248 kb on - strand, within Rru_A1191at 1409.340 kb on + strand, within Rru_A1191at 1409.341 kb on - strand, within Rru_A1191at 1409.505 kb on + strandat 1409.505 kb on + strandat 1409.505 kb on + strandat 1409.506 kb on - strandat 1409.675 kb on + strandat 1409.675 kb on + strandat 1409.675 kb on + strandat 1409.676 kb on - strandat 1409.676 kb on - strandat 1409.676 kb on - strandat 1409.677 kb on + strandat 1409.737 kb on + strand, within Rru_A1192at 1409.737 kb on + strand, within Rru_A1192at 1409.738 kb on - strand, within Rru_A1192at 1409.928 kb on + strand, within Rru_A1192at 1409.929 kb on - strand, within Rru_A1192at 1409.929 kb on - strand, within Rru_A1192at 1410.124 kb on + strand, within Rru_A1192at 1410.129 kb on + strand, within Rru_A1192at 1410.130 kb on - strand, within Rru_A1192

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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1,407,999 + Rru_A1190 0.50 -2.0
1,408,213 - Rru_A1190 0.85 -1.0
1,408,348 + +1.1
1,408,349 - -0.0
1,408,543 - Rru_A1191 0.13 -0.0
1,408,662 - Rru_A1191 0.24 -1.2
1,408,824 + Rru_A1191 0.39 -0.0
1,408,825 - Rru_A1191 0.39 -1.0
1,408,894 - Rru_A1191 0.45 -0.4
1,408,894 - Rru_A1191 0.45 -1.4
1,408,894 - Rru_A1191 0.45 -0.0
1,409,040 + Rru_A1191 0.58 -1.8
1,409,063 + Rru_A1191 0.60 -0.0
1,409,063 + Rru_A1191 0.60 -0.0
1,409,063 + Rru_A1191 0.60 -2.0
1,409,064 - Rru_A1191 0.60 -0.0
1,409,064 - Rru_A1191 0.60 -0.0
1,409,064 - Rru_A1191 0.60 -3.2
1,409,064 - Rru_A1191 0.60 -2.9
1,409,064 - Rru_A1191 0.60 -0.0
1,409,067 + Rru_A1191 0.60 -0.0
1,409,067 + Rru_A1191 0.60 -0.0
1,409,067 + Rru_A1191 0.60 -0.0
1,409,067 + Rru_A1191 0.60 -0.0
1,409,067 + Rru_A1191 0.60 -3.6
1,409,067 + Rru_A1191 0.60 -0.0
1,409,068 - Rru_A1191 0.60 -0.0
1,409,068 - Rru_A1191 0.60 -1.4
1,409,068 - Rru_A1191 0.60 -2.0
1,409,068 - Rru_A1191 0.60 -2.0
1,409,068 - Rru_A1191 0.60 -1.3
1,409,068 - Rru_A1191 0.60 -0.0
1,409,068 - Rru_A1191 0.60 -3.7
1,409,076 - Rru_A1191 0.61 -3.0
1,409,247 + Rru_A1191 0.77 -0.0
1,409,247 + Rru_A1191 0.77 -0.0
1,409,247 + Rru_A1191 0.77 -0.0
1,409,247 + Rru_A1191 0.77 -0.0
1,409,247 + Rru_A1191 0.77 -2.6
1,409,248 - Rru_A1191 0.77 -0.0
1,409,340 + Rru_A1191 0.85 -0.0
1,409,341 - Rru_A1191 0.85 -0.0
1,409,505 + -0.0
1,409,505 + +0.5
1,409,505 + -2.0
1,409,506 - -0.8
1,409,675 + -0.3
1,409,675 + +0.5
1,409,675 + +0.6
1,409,676 - +1.0
1,409,676 - -0.1
1,409,676 - -1.0
1,409,677 + -0.0
1,409,737 + Rru_A1192 0.17 +1.1
1,409,737 + Rru_A1192 0.17 -0.1
1,409,738 - Rru_A1192 0.17 +1.1
1,409,928 + Rru_A1192 0.51 -0.8
1,409,929 - Rru_A1192 0.51 +1.6
1,409,929 - Rru_A1192 0.51 -0.0
1,410,124 + Rru_A1192 0.85 +1.3
1,410,129 + Rru_A1192 0.86 -1.0
1,410,130 - Rru_A1192 0.86 -0.0

Or see this region's nucleotide sequence