Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1120

Experiment: acetate; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate; Light intensity 9 uM
1,317,234	+		Rru_A1119	0.47	+0.8
1,317,234	+		Rru_A1119	0.47	-0.0
1,317,234	+		Rru_A1119	0.47	+0.4
1,317,283	+		Rru_A1119	0.51	-1.0
1,317,319	-		Rru_A1119	0.54	-0.0
1,317,319	-		Rru_A1119	0.54	-1.6
1,317,319	-		Rru_A1119	0.54	-0.0
1,317,319	-		Rru_A1119	0.54	-0.0
1,317,428	+		Rru_A1119	0.63	+1.0
1,317,483	-		Rru_A1119	0.68	+0.2
1,317,483	-		Rru_A1119	0.68	+1.5
1,317,673	-		Rru_A1119	0.84	-0.0
1,317,673	-		Rru_A1119	0.84	-0.0
1,317,907	+				-0.0
1,317,907	+				-0.0
1,317,997	+				-0.0
1,317,997	+				+1.4
1,317,997	+				-0.0
1,317,998	-				-1.6
1,317,998	-				-0.0
1,318,025	+				+1.8
1,318,026	-				-1.0
1,318,026	-				-1.0
1,318,031	-				+2.6
1,318,031	-				-0.0
1,318,225	+		Rru_A1120	0.10	+1.0
1,318,225	+		Rru_A1120	0.10	-0.0
1,318,225	+		Rru_A1120	0.10	-0.0
1,318,225	+		Rru_A1120	0.10	+1.8
1,318,227	+		Rru_A1120	0.10	+0.4
1,318,227	+		Rru_A1120	0.10	-1.5
1,318,332	+		Rru_A1120	0.16	-0.0
1,318,579	+		Rru_A1120	0.29	-0.0
1,318,579	+		Rru_A1120	0.29	-1.0
1,318,591	+		Rru_A1120	0.30	+1.6
1,318,592	-		Rru_A1120	0.30	+0.8
1,318,625	-		Rru_A1120	0.32	-0.0
1,318,733	-		Rru_A1120	0.37	-0.0
1,318,733	-		Rru_A1120	0.37	+0.4
1,318,747	+		Rru_A1120	0.38	+1.9
1,318,747	+		Rru_A1120	0.38	+2.4
1,318,748	-		Rru_A1120	0.38	-0.1
1,318,802	-		Rru_A1120	0.41	+0.7
1,318,802	-		Rru_A1120	0.41	-0.0
1,318,956	+		Rru_A1120	0.49	+1.0
1,318,956	+		Rru_A1120	0.49	+0.8
1,318,960	+		Rru_A1120	0.50	-0.0
1,318,960	+		Rru_A1120	0.50	-0.0
1,318,975	+		Rru_A1120	0.50	+2.1
1,318,976	-		Rru_A1120	0.51	+0.6
1,319,005	+		Rru_A1120	0.52	-0.0
1,319,034	+		Rru_A1120	0.54	+1.1
1,319,149	+		Rru_A1120	0.60	-0.0
1,319,149	+		Rru_A1120	0.60	+1.3
1,319,149	+		Rru_A1120	0.60	+2.2
1,319,149	+		Rru_A1120	0.60	-0.0
1,319,150	-		Rru_A1120	0.60	-0.0
1,319,150	-		Rru_A1120	0.60	-1.0
1,319,150	-		Rru_A1120	0.60	-0.0
1,319,151	+		Rru_A1120	0.60	+0.1
1,319,399	-		Rru_A1120	0.73	-0.2
1,319,400	+		Rru_A1120	0.73	-0.0
1,319,401	-		Rru_A1120	0.73	-0.0
1,319,401	-		Rru_A1120	0.73	+0.2
1,319,401	-		Rru_A1120	0.73	+0.8
1,319,410	+		Rru_A1120	0.74	+2.4
1,319,410	+		Rru_A1120	0.74	+1.9
1,319,683	-		Rru_A1120	0.89	-0.0
1,319,868	+				-0.0
1,319,868	+				+2.9
1,320,011	+				-0.0
1,320,011	+				+2.9
1,320,012	-				-1.8
1,320,144	+				-0.6
1,320,144	+				-0.0
1,320,144	+				-2.3
1,320,144	+				-1.2
1,320,145	-				-1.5
1,320,145	-				-0.0
1,320,145	-				-0.0
1,320,145	-				-1.4
1,320,195	+				-1.7
1,320,195	+				-0.0
1,320,196	-				-0.0
1,320,231	+				-0.0
1,320,231	+				-0.0
1,320,232	-				-1.9
1,320,645	+		Rru_A1121	0.18	-1.2
1,320,645	+		Rru_A1121	0.18	-1.7
1,320,645	+		Rru_A1121	0.18	-1.1
1,320,646	-		Rru_A1121	0.18	-1.2
1,320,646	-		Rru_A1121	0.18	-0.0
1,320,855	+		Rru_A1121	0.24	-1.7
1,320,856	-		Rru_A1121	0.24	-0.8