Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1119

Experiment: acetate; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate; Light intensity 9 uM
1,315,783	+		Rru_A1118	0.84	+0.8
1,315,784	-		Rru_A1118	0.84	+0.8
1,315,885	+		Rru_A1118	0.87	+0.3
1,315,885	+		Rru_A1118	0.87	+0.9
1,315,885	+		Rru_A1118	0.87	-0.0
1,315,885	+		Rru_A1118	0.87	+0.8
1,315,885	+		Rru_A1118	0.87	+0.5
1,315,886	-		Rru_A1118	0.87	-0.4
1,315,886	-		Rru_A1118	0.87	-0.0
1,315,886	-		Rru_A1118	0.87	+1.4
1,315,963	+		Rru_A1118	0.90	-1.6
1,315,964	-		Rru_A1118	0.90	+0.5
1,315,964	-		Rru_A1118	0.90	-1.0
1,316,138	+				+0.8
1,316,138	+				-0.0
1,316,139	-				+0.4
1,316,139	-				-0.0
1,316,139	-				+0.7
1,316,139	-				+0.1
1,316,351	-				-0.0
1,316,383	+				-0.0
1,316,384	-				-0.0
1,316,494	-				+1.4
1,316,511	+				-0.0
1,316,511	+				+0.6
1,316,554	+				+0.2
1,316,594	+				-0.0
1,316,594	+				-0.0
1,316,595	-				+0.9
1,316,599	+				-0.0
1,316,599	+				+1.0
1,316,600	-				+0.2
1,316,600	-				-0.1
1,316,600	-				+0.8
1,316,634	+				+0.8
1,316,774	+				-1.0
1,316,775	-				+1.2
1,316,775	-				-0.0
1,317,024	+		Rru_A1119	0.30	+0.7
1,317,024	+		Rru_A1119	0.30	-1.0
1,317,024	+		Rru_A1119	0.30	+1.0
1,317,025	-		Rru_A1119	0.30	+0.9
1,317,025	-		Rru_A1119	0.30	+1.8
1,317,234	+		Rru_A1119	0.47	+0.8
1,317,234	+		Rru_A1119	0.47	-0.0
1,317,234	+		Rru_A1119	0.47	+0.4
1,317,283	+		Rru_A1119	0.51	-1.0
1,317,319	-		Rru_A1119	0.54	-0.0
1,317,319	-		Rru_A1119	0.54	-1.6
1,317,319	-		Rru_A1119	0.54	-0.0
1,317,319	-		Rru_A1119	0.54	-0.0
1,317,428	+		Rru_A1119	0.63	+1.0
1,317,483	-		Rru_A1119	0.68	+0.2
1,317,483	-		Rru_A1119	0.68	+1.5
1,317,673	-		Rru_A1119	0.84	-0.0
1,317,673	-		Rru_A1119	0.84	-0.0
1,317,907	+				-0.0
1,317,907	+				-0.0
1,317,997	+				-0.0
1,317,997	+				+1.4
1,317,997	+				-0.0
1,317,998	-				-1.6
1,317,998	-				-0.0
1,318,025	+				+1.8
1,318,026	-				-1.0
1,318,026	-				-1.0
1,318,031	-				+2.6
1,318,031	-				-0.0
1,318,225	+		Rru_A1120	0.10	+1.0
1,318,225	+		Rru_A1120	0.10	-0.0
1,318,225	+		Rru_A1120	0.10	-0.0
1,318,225	+		Rru_A1120	0.10	+1.8
1,318,227	+		Rru_A1120	0.10	+0.4
1,318,227	+		Rru_A1120	0.10	-1.5
1,318,332	+		Rru_A1120	0.16	-0.0
1,318,579	+		Rru_A1120	0.29	-0.0
1,318,579	+		Rru_A1120	0.29	-1.0
1,318,591	+		Rru_A1120	0.30	+1.6
1,318,592	-		Rru_A1120	0.30	+0.8
1,318,625	-		Rru_A1120	0.32	-0.0
1,318,733	-		Rru_A1120	0.37	-0.0
1,318,733	-		Rru_A1120	0.37	+0.4
1,318,747	+		Rru_A1120	0.38	+1.9
1,318,747	+		Rru_A1120	0.38	+2.4
1,318,748	-		Rru_A1120	0.38	-0.1
1,318,802	-		Rru_A1120	0.41	+0.7
1,318,802	-		Rru_A1120	0.41	-0.0