Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1114

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1111 and Rru_A1112 are separated by 82 nucleotidesRru_A1112 and Rru_A1113 overlap by 11 nucleotidesRru_A1113 and Rru_A1114 are separated by 30 nucleotidesRru_A1114 and Rru_A1115 are separated by 75 nucleotides Rru_A1111: Rru_A1111 - Pseudouridine synthase, RluD (NCBI), at 1,306,656 to 1,307,687 _A1111 Rru_A1112: Rru_A1112 - hypothetical protein (NCBI), at 1,307,770 to 1,308,183 _A1112 Rru_A1113: Rru_A1113 - Mov34/MPN/PAD-1 (NCBI), at 1,308,173 to 1,308,628 _A1113 Rru_A1114: Rru_A1114 - Major facilitator superfamily MFS_1 (NCBI), at 1,308,659 to 1,310,119 _A1114 Rru_A1115: Rru_A1115 - Transcriptional Regulator, XRE family (NCBI), at 1,310,195 to 1,311,133 _A1115 Position (kb) 1308 1309 1310 1311Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1308.058 kb on + strand, within Rru_A1112at 1308.729 kb on + strandat 1308.730 kb on - strandat 1308.874 kb on + strand, within Rru_A1114at 1309.054 kb on - strand, within Rru_A1114at 1309.054 kb on - strand, within Rru_A1114at 1309.054 kb on - strand, within Rru_A1114at 1309.054 kb on - strand, within Rru_A1114at 1309.240 kb on - strand, within Rru_A1114at 1309.689 kb on + strand, within Rru_A1114at 1309.690 kb on - strand, within Rru_A1114at 1309.710 kb on + strand, within Rru_A1114at 1309.711 kb on - strand, within Rru_A1114at 1309.711 kb on - strand, within Rru_A1114at 1309.889 kb on + strand, within Rru_A1114at 1310.368 kb on + strand, within Rru_A1115at 1310.368 kb on + strand, within Rru_A1115at 1310.368 kb on + strand, within Rru_A1115at 1310.369 kb on - strand, within Rru_A1115at 1310.369 kb on - strand, within Rru_A1115at 1310.369 kb on - strand, within Rru_A1115at 1310.376 kb on - strand, within Rru_A1115at 1310.376 kb on - strand, within Rru_A1115at 1310.377 kb on + strand, within Rru_A1115at 1310.377 kb on + strand, within Rru_A1115at 1310.377 kb on + strand, within Rru_A1115at 1310.377 kb on + strand, within Rru_A1115at 1310.377 kb on + strand, within Rru_A1115at 1310.377 kb on + strand, within Rru_A1115at 1310.378 kb on - strand, within Rru_A1115at 1310.378 kb on - strand, within Rru_A1115at 1310.378 kb on - strand, within Rru_A1115at 1310.378 kb on - strand, within Rru_A1115at 1310.378 kb on - strand, within Rru_A1115at 1310.378 kb on - strand, within Rru_A1115at 1310.378 kb on - strand, within Rru_A1115at 1310.401 kb on + strand, within Rru_A1115at 1310.401 kb on + strand, within Rru_A1115at 1310.404 kb on - strand, within Rru_A1115at 1310.404 kb on - strand, within Rru_A1115at 1310.404 kb on - strand, within Rru_A1115at 1310.404 kb on - strand, within Rru_A1115at 1310.582 kb on + strand, within Rru_A1115at 1310.582 kb on + strand, within Rru_A1115at 1310.582 kb on + strand, within Rru_A1115at 1310.582 kb on + strand, within Rru_A1115at 1310.583 kb on - strand, within Rru_A1115at 1310.583 kb on - strand, within Rru_A1115at 1310.583 kb on - strand, within Rru_A1115at 1310.583 kb on - strand, within Rru_A1115at 1310.583 kb on - strand, within Rru_A1115at 1310.583 kb on - strand, within Rru_A1115at 1310.583 kb on - strand, within Rru_A1115at 1310.583 kb on - strand, within Rru_A1115at 1310.620 kb on + strand, within Rru_A1115at 1310.621 kb on - strand, within Rru_A1115at 1310.771 kb on + strand, within Rru_A1115at 1310.772 kb on - strand, within Rru_A1115at 1310.797 kb on + strand, within Rru_A1115at 1310.797 kb on + strand, within Rru_A1115at 1310.798 kb on - strand, within Rru_A1115at 1310.798 kb on - strand, within Rru_A1115at 1310.798 kb on - strand, within Rru_A1115at 1310.798 kb on - strand, within Rru_A1115at 1310.981 kb on + strand, within Rru_A1115at 1310.981 kb on + strand, within Rru_A1115at 1310.981 kb on + strand, within Rru_A1115at 1310.982 kb on - strand, within Rru_A1115

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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1,308,058 + Rru_A1112 0.70 -1.6
1,308,729 + +0.1
1,308,730 - -0.0
1,308,874 + Rru_A1114 0.15 +1.3
1,309,054 - Rru_A1114 0.27 +1.0
1,309,054 - Rru_A1114 0.27 +1.2
1,309,054 - Rru_A1114 0.27 +0.6
1,309,054 - Rru_A1114 0.27 +1.0
1,309,240 - Rru_A1114 0.40 +0.9
1,309,689 + Rru_A1114 0.70 +0.3
1,309,690 - Rru_A1114 0.71 +0.4
1,309,710 + Rru_A1114 0.72 -0.7
1,309,711 - Rru_A1114 0.72 -0.0
1,309,711 - Rru_A1114 0.72 -0.3
1,309,889 + Rru_A1114 0.84 +0.2
1,310,368 + Rru_A1115 0.18 -2.3
1,310,368 + Rru_A1115 0.18 -0.0
1,310,368 + Rru_A1115 0.18 -0.0
1,310,369 - Rru_A1115 0.19 -2.2
1,310,369 - Rru_A1115 0.19 +1.3
1,310,369 - Rru_A1115 0.19 +2.0
1,310,376 - Rru_A1115 0.19 +1.4
1,310,376 - Rru_A1115 0.19 -0.0
1,310,377 + Rru_A1115 0.19 +0.4
1,310,377 + Rru_A1115 0.19 -0.0
1,310,377 + Rru_A1115 0.19 +0.6
1,310,377 + Rru_A1115 0.19 +1.6
1,310,377 + Rru_A1115 0.19 +0.1
1,310,377 + Rru_A1115 0.19 +0.0
1,310,378 - Rru_A1115 0.19 +1.2
1,310,378 - Rru_A1115 0.19 +0.1
1,310,378 - Rru_A1115 0.19 -0.0
1,310,378 - Rru_A1115 0.19 -0.0
1,310,378 - Rru_A1115 0.19 -0.1
1,310,378 - Rru_A1115 0.19 -0.0
1,310,378 - Rru_A1115 0.19 +1.1
1,310,401 + Rru_A1115 0.22 -0.0
1,310,401 + Rru_A1115 0.22 -1.0
1,310,404 - Rru_A1115 0.22 +0.4
1,310,404 - Rru_A1115 0.22 +2.8
1,310,404 - Rru_A1115 0.22 -0.0
1,310,404 - Rru_A1115 0.22 +0.4
1,310,582 + Rru_A1115 0.41 -0.4
1,310,582 + Rru_A1115 0.41 -0.0
1,310,582 + Rru_A1115 0.41 -0.3
1,310,582 + Rru_A1115 0.41 +0.8
1,310,583 - Rru_A1115 0.41 +0.1
1,310,583 - Rru_A1115 0.41 +0.2
1,310,583 - Rru_A1115 0.41 -0.0
1,310,583 - Rru_A1115 0.41 -1.0
1,310,583 - Rru_A1115 0.41 -0.0
1,310,583 - Rru_A1115 0.41 -0.0
1,310,583 - Rru_A1115 0.41 +0.7
1,310,583 - Rru_A1115 0.41 +2.0
1,310,620 + Rru_A1115 0.45 -0.0
1,310,621 - Rru_A1115 0.45 -0.0
1,310,771 + Rru_A1115 0.61 +1.6
1,310,772 - Rru_A1115 0.61 -0.0
1,310,797 + Rru_A1115 0.64 +0.2
1,310,797 + Rru_A1115 0.64 -0.4
1,310,798 - Rru_A1115 0.64 -0.0
1,310,798 - Rru_A1115 0.64 -0.1
1,310,798 - Rru_A1115 0.64 +0.4
1,310,798 - Rru_A1115 0.64 -0.0
1,310,981 + Rru_A1115 0.84 -0.0
1,310,981 + Rru_A1115 0.84 +0.1
1,310,981 + Rru_A1115 0.84 -0.0
1,310,982 - Rru_A1115 0.84 -0.0

Or see this region's nucleotide sequence