Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1111

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1110 and Rru_A1111 are separated by 219 nucleotidesRru_A1111 and Rru_A1112 are separated by 82 nucleotidesRru_A1112 and Rru_A1113 overlap by 11 nucleotidesRru_A1113 and Rru_A1114 are separated by 30 nucleotides Rru_A1110: Rru_A1110 - Sigma 32 (RpoH) (NCBI), at 1,305,537 to 1,306,436 _A1110 Rru_A1111: Rru_A1111 - Pseudouridine synthase, RluD (NCBI), at 1,306,656 to 1,307,687 _A1111 Rru_A1112: Rru_A1112 - hypothetical protein (NCBI), at 1,307,770 to 1,308,183 _A1112 Rru_A1113: Rru_A1113 - Mov34/MPN/PAD-1 (NCBI), at 1,308,173 to 1,308,628 _A1113 Rru_A1114: Rru_A1114 - Major facilitator superfamily MFS_1 (NCBI), at 1,308,659 to 1,310,119 _A1114 Position (kb) 1306 1307 1308Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1305.656 kb on - strand, within Rru_A1110at 1305.865 kb on - strand, within Rru_A1110at 1306.090 kb on + strand, within Rru_A1110at 1306.090 kb on + strand, within Rru_A1110at 1306.090 kb on + strand, within Rru_A1110at 1306.090 kb on + strand, within Rru_A1110at 1306.091 kb on - strand, within Rru_A1110at 1306.091 kb on - strand, within Rru_A1110at 1306.091 kb on - strand, within Rru_A1110at 1306.091 kb on - strand, within Rru_A1110at 1306.121 kb on + strand, within Rru_A1110at 1306.121 kb on + strand, within Rru_A1110at 1306.121 kb on + strand, within Rru_A1110at 1306.121 kb on + strand, within Rru_A1110at 1306.121 kb on + strand, within Rru_A1110at 1306.121 kb on + strand, within Rru_A1110at 1306.121 kb on + strand, within Rru_A1110at 1306.122 kb on - strand, within Rru_A1110at 1306.122 kb on - strand, within Rru_A1110at 1306.122 kb on - strand, within Rru_A1110at 1306.122 kb on - strand, within Rru_A1110at 1306.122 kb on - strand, within Rru_A1110at 1306.122 kb on - strand, within Rru_A1110at 1306.122 kb on - strand, within Rru_A1110at 1306.126 kb on + strand, within Rru_A1110at 1306.126 kb on + strand, within Rru_A1110at 1306.126 kb on + strand, within Rru_A1110at 1306.126 kb on + strand, within Rru_A1110at 1306.126 kb on + strand, within Rru_A1110at 1306.126 kb on + strand, within Rru_A1110at 1306.126 kb on + strand, within Rru_A1110at 1306.126 kb on + strand, within Rru_A1110at 1306.126 kb on + strand, within Rru_A1110at 1306.126 kb on + strand, within Rru_A1110at 1306.126 kb on + strand, within Rru_A1110at 1306.126 kb on + strand, within Rru_A1110at 1306.126 kb on + strand, within Rru_A1110at 1306.126 kb on + strand, within Rru_A1110at 1306.126 kb on + strand, within Rru_A1110at 1306.126 kb on + strand, within Rru_A1110at 1306.126 kb on + strand, within Rru_A1110at 1306.127 kb on - strand, within Rru_A1110at 1306.127 kb on - strand, within Rru_A1110at 1306.127 kb on - strand, within Rru_A1110at 1306.127 kb on - strand, within Rru_A1110at 1306.127 kb on - strand, within Rru_A1110at 1306.127 kb on - strand, within Rru_A1110at 1306.127 kb on - strand, within Rru_A1110at 1306.127 kb on - strand, within Rru_A1110at 1306.127 kb on - strand, within Rru_A1110at 1306.127 kb on - strand, within Rru_A1110at 1306.127 kb on - strand, within Rru_A1110at 1306.334 kb on - strand, within Rru_A1110at 1306.334 kb on - strand, within Rru_A1110at 1306.334 kb on - strand, within Rru_A1110at 1306.381 kb on + strandat 1306.381 kb on + strandat 1306.381 kb on + strandat 1306.382 kb on - strandat 1306.382 kb on - strandat 1306.382 kb on - strandat 1306.451 kb on + strandat 1306.451 kb on + strandat 1306.451 kb on + strandat 1306.451 kb on + strandat 1306.451 kb on + strandat 1306.452 kb on - strandat 1306.488 kb on + strandat 1306.534 kb on + strandat 1306.534 kb on + strandat 1306.534 kb on + strandat 1306.534 kb on + strandat 1306.534 kb on + strandat 1306.535 kb on - strandat 1306.630 kb on - strandat 1306.630 kb on - strandat 1306.630 kb on - strandat 1306.634 kb on + strandat 1306.634 kb on + strandat 1306.634 kb on + strandat 1306.657 kb on + strandat 1306.764 kb on + strand, within Rru_A1111at 1306.764 kb on + strand, within Rru_A1111at 1306.779 kb on + strand, within Rru_A1111at 1306.779 kb on + strand, within Rru_A1111at 1306.780 kb on - strand, within Rru_A1111at 1306.780 kb on - strand, within Rru_A1111at 1306.780 kb on - strand, within Rru_A1111at 1306.780 kb on - strand, within Rru_A1111at 1306.847 kb on + strand, within Rru_A1111at 1306.848 kb on - strand, within Rru_A1111at 1306.848 kb on - strand, within Rru_A1111at 1306.848 kb on - strand, within Rru_A1111at 1306.895 kb on + strand, within Rru_A1111at 1306.895 kb on + strand, within Rru_A1111at 1306.895 kb on + strand, within Rru_A1111at 1306.896 kb on - strand, within Rru_A1111at 1306.896 kb on - strand, within Rru_A1111at 1307.111 kb on - strand, within Rru_A1111at 1307.111 kb on - strand, within Rru_A1111at 1307.111 kb on - strand, within Rru_A1111at 1307.198 kb on + strand, within Rru_A1111at 1307.199 kb on - strand, within Rru_A1111at 1307.199 kb on - strand, within Rru_A1111at 1307.348 kb on + strand, within Rru_A1111at 1307.371 kb on + strand, within Rru_A1111at 1307.371 kb on + strand, within Rru_A1111at 1307.371 kb on + strand, within Rru_A1111at 1307.371 kb on + strand, within Rru_A1111at 1307.372 kb on - strand, within Rru_A1111at 1307.372 kb on - strand, within Rru_A1111at 1307.372 kb on - strand, within Rru_A1111at 1307.478 kb on + strand, within Rru_A1111at 1307.478 kb on + strand, within Rru_A1111at 1307.479 kb on - strand, within Rru_A1111at 1307.479 kb on - strand, within Rru_A1111at 1307.570 kb on + strand, within Rru_A1111at 1307.570 kb on + strand, within Rru_A1111at 1307.570 kb on + strand, within Rru_A1111at 1307.571 kb on - strand, within Rru_A1111at 1307.571 kb on - strand, within Rru_A1111at 1307.571 kb on - strand, within Rru_A1111at 1308.058 kb on + strand, within Rru_A1112

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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1,305,656 - Rru_A1110 0.13 +0.3
1,305,865 - Rru_A1110 0.36 -0.0
1,306,090 + Rru_A1110 0.61 +0.1
1,306,090 + Rru_A1110 0.61 -0.3
1,306,090 + Rru_A1110 0.61 +0.0
1,306,090 + Rru_A1110 0.61 -0.0
1,306,091 - Rru_A1110 0.62 -1.0
1,306,091 - Rru_A1110 0.62 -0.0
1,306,091 - Rru_A1110 0.62 -0.5
1,306,091 - Rru_A1110 0.62 -0.0
1,306,121 + Rru_A1110 0.65 -0.0
1,306,121 + Rru_A1110 0.65 +0.1
1,306,121 + Rru_A1110 0.65 +0.5
1,306,121 + Rru_A1110 0.65 -0.0
1,306,121 + Rru_A1110 0.65 -0.0
1,306,121 + Rru_A1110 0.65 -0.0
1,306,121 + Rru_A1110 0.65 +0.7
1,306,122 - Rru_A1110 0.65 +0.3
1,306,122 - Rru_A1110 0.65 -0.0
1,306,122 - Rru_A1110 0.65 +1.7
1,306,122 - Rru_A1110 0.65 +0.2
1,306,122 - Rru_A1110 0.65 +1.3
1,306,122 - Rru_A1110 0.65 +0.1
1,306,122 - Rru_A1110 0.65 -0.0
1,306,126 + Rru_A1110 0.65 -0.0
1,306,126 + Rru_A1110 0.65 -0.0
1,306,126 + Rru_A1110 0.65 -0.0
1,306,126 + Rru_A1110 0.65 +0.3
1,306,126 + Rru_A1110 0.65 -0.0
1,306,126 + Rru_A1110 0.65 +0.2
1,306,126 + Rru_A1110 0.65 -0.0
1,306,126 + Rru_A1110 0.65 -0.4
1,306,126 + Rru_A1110 0.65 +0.3
1,306,126 + Rru_A1110 0.65 +0.1
1,306,126 + Rru_A1110 0.65 +0.8
1,306,126 + Rru_A1110 0.65 -0.0
1,306,126 + Rru_A1110 0.65 -0.0
1,306,126 + Rru_A1110 0.65 +0.2
1,306,126 + Rru_A1110 0.65 -0.0
1,306,126 + Rru_A1110 0.65 -0.0
1,306,126 + Rru_A1110 0.65 -0.0
1,306,127 - Rru_A1110 0.66 +0.2
1,306,127 - Rru_A1110 0.66 -0.0
1,306,127 - Rru_A1110 0.66 +0.0
1,306,127 - Rru_A1110 0.66 +0.3
1,306,127 - Rru_A1110 0.66 -0.3
1,306,127 - Rru_A1110 0.66 +1.0
1,306,127 - Rru_A1110 0.66 +0.8
1,306,127 - Rru_A1110 0.66 +0.0
1,306,127 - Rru_A1110 0.66 -1.0
1,306,127 - Rru_A1110 0.66 -0.0
1,306,127 - Rru_A1110 0.66 +0.7
1,306,334 - Rru_A1110 0.89 -0.0
1,306,334 - Rru_A1110 0.89 -0.1
1,306,334 - Rru_A1110 0.89 +0.0
1,306,381 + +0.1
1,306,381 + +0.2
1,306,381 + -0.0
1,306,382 - +0.3
1,306,382 - -0.0
1,306,382 - -0.0
1,306,451 + -0.1
1,306,451 + +0.0
1,306,451 + +0.4
1,306,451 + -0.0
1,306,451 + -0.0
1,306,452 - -2.0
1,306,488 + +0.5
1,306,534 + +0.2
1,306,534 + -1.0
1,306,534 + -0.0
1,306,534 + -0.0
1,306,534 + +0.1
1,306,535 - +0.7
1,306,630 - -1.0
1,306,630 - -0.0
1,306,630 - +1.2
1,306,634 + +0.1
1,306,634 + -0.2
1,306,634 + -0.1
1,306,657 + -0.0
1,306,764 + Rru_A1111 0.10 +2.2
1,306,764 + Rru_A1111 0.10 +2.2
1,306,779 + Rru_A1111 0.12 +1.0
1,306,779 + Rru_A1111 0.12 +3.1
1,306,780 - Rru_A1111 0.12 -0.0
1,306,780 - Rru_A1111 0.12 +2.8
1,306,780 - Rru_A1111 0.12 -1.3
1,306,780 - Rru_A1111 0.12 -0.0
1,306,847 + Rru_A1111 0.19 +1.5
1,306,848 - Rru_A1111 0.19 +2.4
1,306,848 - Rru_A1111 0.19 -0.0
1,306,848 - Rru_A1111 0.19 +1.0
1,306,895 + Rru_A1111 0.23 -2.0
1,306,895 + Rru_A1111 0.23 +1.2
1,306,895 + Rru_A1111 0.23 +2.5
1,306,896 - Rru_A1111 0.23 +2.0
1,306,896 - Rru_A1111 0.23 +2.1
1,307,111 - Rru_A1111 0.44 +1.7
1,307,111 - Rru_A1111 0.44 +2.1
1,307,111 - Rru_A1111 0.44 +1.5
1,307,198 + Rru_A1111 0.53 -0.0
1,307,199 - Rru_A1111 0.53 +2.0
1,307,199 - Rru_A1111 0.53 -0.0
1,307,348 + Rru_A1111 0.67 +1.9
1,307,371 + Rru_A1111 0.69 -0.0
1,307,371 + Rru_A1111 0.69 -1.6
1,307,371 + Rru_A1111 0.69 -0.0
1,307,371 + Rru_A1111 0.69 +1.9
1,307,372 - Rru_A1111 0.69 -0.0
1,307,372 - Rru_A1111 0.69 +2.3
1,307,372 - Rru_A1111 0.69 +1.8
1,307,478 + Rru_A1111 0.80 -0.0
1,307,478 + Rru_A1111 0.80 +0.5
1,307,479 - Rru_A1111 0.80 +1.2
1,307,479 - Rru_A1111 0.80 -1.6
1,307,570 + Rru_A1111 0.89 -0.0
1,307,570 + Rru_A1111 0.89 +1.5
1,307,570 + Rru_A1111 0.89 +2.7
1,307,571 - Rru_A1111 0.89 +1.9
1,307,571 - Rru_A1111 0.89 +2.2
1,307,571 - Rru_A1111 0.89 -0.0
1,308,058 + Rru_A1112 0.70 -1.6

Or see this region's nucleotide sequence