Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1059

Experiment: acetate; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate; Light intensity 9 uM
1,251,528	+		Rru_A1057	0.34	+0.7
1,251,528	+		Rru_A1057	0.34	-0.0
1,251,546	+		Rru_A1057	0.36	+0.2
1,251,546	+		Rru_A1057	0.36	-0.0
1,251,547	-		Rru_A1057	0.36	-0.0
1,251,547	-		Rru_A1057	0.36	-0.0
1,251,585	+		Rru_A1057	0.41	-1.6
1,251,586	-		Rru_A1057	0.41	-0.0
1,251,586	-		Rru_A1057	0.41	-0.0
1,251,724	+		Rru_A1057	0.59	-0.0
1,251,724	+		Rru_A1057	0.59	-0.0
1,251,724	+		Rru_A1057	0.59	-0.0
1,251,725	-		Rru_A1057	0.59	+0.3
1,251,725	-		Rru_A1057	0.59	-0.1
1,251,725	-		Rru_A1057	0.59	+0.6
1,251,725	-		Rru_A1057	0.59	-0.0
1,251,725	-		Rru_A1057	0.59	-0.0
1,251,970	+				-0.0
1,251,970	+				-0.8
1,251,970	+				+0.3
1,251,970	+				-0.9
1,251,971	-				-0.0
1,252,149	+		Rru_A1058	0.21	-0.0
1,252,150	-		Rru_A1058	0.21	-1.0
1,252,162	+		Rru_A1058	0.24	-1.0
1,252,363	+		Rru_A1058	0.68	-0.0
1,252,363	+		Rru_A1058	0.68	+0.7
1,252,364	-		Rru_A1058	0.68	-0.0
1,252,364	-		Rru_A1058	0.68	+0.1
1,252,364	-		Rru_A1058	0.68	-0.0
1,252,392	+		Rru_A1058	0.74	-0.0
1,252,507	+				-0.0
1,252,515	-				+0.6
1,252,545	+				+1.7
1,252,548	-				-0.0
1,252,548	-				-0.8
1,252,548	-				-0.0
1,252,890	+		Rru_A1059	0.38	+0.9
1,252,891	-		Rru_A1059	0.38	-0.0
1,252,892	+		Rru_A1059	0.39	-0.0
1,252,892	+		Rru_A1059	0.39	+0.0
1,252,892	+		Rru_A1059	0.39	-0.0
1,252,893	-		Rru_A1059	0.39	-1.0
1,252,968	-		Rru_A1059	0.46	-0.0
1,252,968	-		Rru_A1059	0.46	+0.4
1,253,132	+		Rru_A1059	0.63	-0.0
1,253,132	+		Rru_A1059	0.63	+0.8
1,253,132	+		Rru_A1059	0.63	-0.0
1,253,132	+		Rru_A1059	0.63	+0.2
1,253,132	+		Rru_A1059	0.63	+0.9
1,253,132	+		Rru_A1059	0.63	-0.2
1,253,133	-		Rru_A1059	0.63	+1.6
1,253,133	-		Rru_A1059	0.63	+0.6
1,253,133	-		Rru_A1059	0.63	-0.0
1,253,133	-		Rru_A1059	0.63	+1.7
1,253,133	-		Rru_A1059	0.63	-0.0
1,253,133	-		Rru_A1059	0.63	-0.0
1,253,136	-		Rru_A1059	0.63	-0.1
1,253,136	-		Rru_A1059	0.63	-0.0
1,253,195	+		Rru_A1059	0.69	+0.3
1,253,195	+		Rru_A1059	0.69	-0.0
1,253,225	+		Rru_A1059	0.72	+0.4
1,253,225	+		Rru_A1059	0.72	+0.2
1,253,225	+		Rru_A1059	0.72	-0.0
1,253,226	-		Rru_A1059	0.72	+0.7
1,253,330	+		Rru_A1059	0.83	+0.6
1,253,330	+		Rru_A1059	0.83	+0.2
1,253,330	+		Rru_A1059	0.83	+0.6
1,253,330	+		Rru_A1059	0.83	-0.0
1,253,330	+		Rru_A1059	0.83	-0.0
1,253,330	+		Rru_A1059	0.83	+0.4
1,253,331	-		Rru_A1059	0.83	-0.0
1,253,331	-		Rru_A1059	0.83	+0.4
1,253,331	-		Rru_A1059	0.83	-0.0
1,253,331	-		Rru_A1059	0.83	+0.3
1,253,331	-		Rru_A1059	0.83	-0.6
1,253,334	+		Rru_A1059	0.83	-0.0
1,253,334	+		Rru_A1059	0.83	+0.3
1,253,334	+		Rru_A1059	0.83	+0.3
1,253,334	+		Rru_A1059	0.83	+0.8
1,253,334	+		Rru_A1059	0.83	-0.0
1,253,334	+		Rru_A1059	0.83	-0.0
1,253,335	-		Rru_A1059	0.84	-0.2
1,253,335	-		Rru_A1059	0.84	-0.0
1,253,335	-		Rru_A1059	0.84	+0.9
1,253,335	-		Rru_A1059	0.84	+0.1
1,253,335	-		Rru_A1059	0.84	-0.0
1,253,417	+				-1.0
1,253,417	+				-0.3
1,253,417	+				-0.0
1,253,417	+				-1.0
1,253,418	-				-0.0
1,253,418	-				-0.1
1,253,418	-				+0.4
1,253,501	+				+0.0
1,253,502	-				+0.3
1,253,502	-				-0.0
1,253,502	-				+0.6
1,253,502	-				+0.1
1,253,502	-				-0.0
1,253,502	-				+0.3
1,253,502	-				+0.1
1,253,502	-				-1.0
1,253,538	-				-0.0
1,253,538	-				-0.0
1,253,549	+				-0.0
1,253,601	+				-0.0
1,254,063	+		Rru_A1060	0.49	-0.0
1,254,063	+		Rru_A1060	0.49	-0.0
1,254,279	+		Rru_A1060	0.72	-1.0
1,254,279	+		Rru_A1060	0.72	-1.0
1,254,280	-		Rru_A1060	0.72	-0.0
1,254,477	-				+1.7