Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1047 and Rru_A1048 are separated by 184 nucleotides Rru_A1048 and Rru_A1049 overlap by 11 nucleotides
Rru_A1047: Rru_A1047 - 6-phosphofructokinase (NCBI), at 1,240,770 to 1,241,870
_A1047
Rru_A1048: Rru_A1048 - Protein of unknown function DUF465 (NCBI), at 1,242,055 to 1,242,261
_A1048
Rru_A1049: Rru_A1049 - GGDEF family protein (NCBI), at 1,242,251 to 1,243,084
_A1049
Position (kb) 1242
1243 Strain fitness (log2 ratio) -2
-1
0
1 at 1241.074 kb on + strand, within Rru_A1047 at 1241.075 kb on - strand, within Rru_A1047 at 1241.075 kb on - strand, within Rru_A1047 at 1241.075 kb on - strand, within Rru_A1047 at 1241.075 kb on - strand, within Rru_A1047 at 1241.075 kb on - strand, within Rru_A1047 at 1241.075 kb on - strand, within Rru_A1047 at 1241.113 kb on + strand, within Rru_A1047 at 1241.114 kb on - strand, within Rru_A1047 at 1241.114 kb on - strand, within Rru_A1047 at 1241.114 kb on - strand, within Rru_A1047 at 1241.231 kb on + strand, within Rru_A1047 at 1241.232 kb on - strand, within Rru_A1047 at 1241.232 kb on - strand, within Rru_A1047 at 1241.232 kb on - strand, within Rru_A1047 at 1241.233 kb on + strand, within Rru_A1047 at 1241.416 kb on + strand, within Rru_A1047 at 1241.770 kb on + strand at 1241.770 kb on + strand at 1241.858 kb on + strand at 1241.858 kb on + strand at 1241.859 kb on - strand at 1241.859 kb on - strand at 1241.891 kb on + strand at 1241.891 kb on + strand at 1241.892 kb on - strand at 1241.899 kb on + strand at 1241.899 kb on + strand at 1241.900 kb on - strand at 1241.958 kb on + strand at 1241.959 kb on - strand at 1241.960 kb on + strand at 1241.960 kb on + strand at 1241.961 kb on - strand at 1241.961 kb on - strand at 1241.961 kb on - strand at 1241.998 kb on - strand at 1242.092 kb on + strand, within Rru_A1048 at 1242.102 kb on - strand, within Rru_A1048 at 1242.195 kb on + strand, within Rru_A1048 at 1242.196 kb on - strand, within Rru_A1048 at 1242.272 kb on + strand at 1242.639 kb on + strand, within Rru_A1049 at 1242.639 kb on + strand, within Rru_A1049 at 1242.639 kb on + strand, within Rru_A1049 at 1242.639 kb on + strand, within Rru_A1049 at 1242.639 kb on + strand, within Rru_A1049 at 1242.640 kb on - strand, within Rru_A1049 at 1242.640 kb on - strand, within Rru_A1049 at 1243.012 kb on - strand at 1243.012 kb on - strand at 1243.158 kb on + strand at 1243.158 kb on + strand at 1243.158 kb on + strand at 1243.158 kb on + strand at 1243.159 kb on - strand at 1243.159 kb on - strand at 1243.159 kb on - strand at 1243.159 kb on - strand at 1243.159 kb on - strand at 1243.159 kb on - strand at 1243.174 kb on + strand at 1243.174 kb on + strand at 1243.248 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 1,241,074 + Rru_A1047 0.28 -0.0 1,241,075 - Rru_A1047 0.28 +0.5 1,241,075 - Rru_A1047 0.28 +0.5 1,241,075 - Rru_A1047 0.28 -1.0 1,241,075 - Rru_A1047 0.28 -1.0 1,241,075 - Rru_A1047 0.28 -1.6 1,241,075 - Rru_A1047 0.28 +1.0 1,241,113 + Rru_A1047 0.31 -2.2 1,241,114 - Rru_A1047 0.31 -1.0 1,241,114 - Rru_A1047 0.31 -0.0 1,241,114 - Rru_A1047 0.31 -1.0 1,241,231 + Rru_A1047 0.42 -0.0 1,241,232 - Rru_A1047 0.42 -0.0 1,241,232 - Rru_A1047 0.42 -0.0 1,241,232 - Rru_A1047 0.42 -0.0 1,241,233 + Rru_A1047 0.42 -0.0 1,241,416 + Rru_A1047 0.59 -0.0 1,241,770 + -0.0 1,241,770 + -0.0 1,241,858 + -1.8 1,241,858 + -0.0 1,241,859 - -1.0 1,241,859 - -1.0 1,241,891 + -0.0 1,241,891 + -1.5 1,241,892 - -0.0 1,241,899 + +0.9 1,241,899 + -0.0 1,241,900 - -0.0 1,241,958 + -0.2 1,241,959 - -0.0 1,241,960 + +1.3 1,241,960 + -0.0 1,241,961 - +0.3 1,241,961 - +0.1 1,241,961 - -0.0 1,241,998 - -0.0 1,242,092 + Rru_A1048 0.18 -2.0 1,242,102 - Rru_A1048 0.23 -0.0 1,242,195 + Rru_A1048 0.68 -1.0 1,242,196 - Rru_A1048 0.68 -0.0 1,242,272 + -0.0 1,242,639 + Rru_A1049 0.47 -0.0 1,242,639 + Rru_A1049 0.47 +0.1 1,242,639 + Rru_A1049 0.47 -0.0 1,242,639 + Rru_A1049 0.47 -0.0 1,242,639 + Rru_A1049 0.47 -1.0 1,242,640 - Rru_A1049 0.47 -0.0 1,242,640 - Rru_A1049 0.47 -0.0 1,243,012 - +0.3 1,243,012 - -0.0 1,243,158 + -0.3 1,243,158 + +0.6 1,243,158 + -0.0 1,243,158 + -0.1 1,243,159 - -1.6 1,243,159 - +0.8 1,243,159 - +0.9 1,243,159 - -0.0 1,243,159 - -0.0 1,243,159 - -0.0 1,243,174 + +0.1 1,243,174 + +1.2 1,243,248 + +1.0
Or see this region's nucleotide sequence