Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1014

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1013 and Rru_A1014 are separated by 34 nucleotidesRru_A1014 and Rru_A1015 are separated by 71 nucleotidesRru_A1015 and Rru_A1016 overlap by 1 nucleotides Rru_A1013: Rru_A1013 - ABC transporter component (NCBI), at 1,201,234 to 1,203,066 _A1013 Rru_A1014: Rru_A1014 - hypothetical protein (NCBI), at 1,203,101 to 1,203,481 _A1014 Rru_A1015: Rru_A1015 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 1,203,553 to 1,204,389 _A1015 Rru_A1016: Rru_A1016 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 1,204,389 to 1,205,381 _A1016 Position (kb) 1203 1204Strain fitness (log2 ratio) -1 0 1at 1202.284 kb on + strand, within Rru_A1013at 1202.285 kb on - strand, within Rru_A1013at 1202.285 kb on - strand, within Rru_A1013at 1202.285 kb on - strand, within Rru_A1013at 1202.320 kb on - strand, within Rru_A1013at 1202.398 kb on + strand, within Rru_A1013at 1202.399 kb on - strand, within Rru_A1013at 1202.400 kb on + strand, within Rru_A1013at 1202.400 kb on + strand, within Rru_A1013at 1202.401 kb on - strand, within Rru_A1013at 1202.401 kb on - strand, within Rru_A1013at 1202.401 kb on - strand, within Rru_A1013at 1202.401 kb on - strand, within Rru_A1013at 1202.587 kb on + strand, within Rru_A1013at 1202.700 kb on + strand, within Rru_A1013at 1202.840 kb on - strand, within Rru_A1013at 1202.892 kb on + strandat 1202.960 kb on - strandat 1203.224 kb on + strand, within Rru_A1014at 1203.224 kb on + strand, within Rru_A1014at 1203.224 kb on + strand, within Rru_A1014at 1203.224 kb on + strand, within Rru_A1014at 1203.224 kb on + strand, within Rru_A1014at 1203.225 kb on - strand, within Rru_A1014at 1203.225 kb on - strand, within Rru_A1014at 1203.480 kb on - strandat 1203.944 kb on + strand, within Rru_A1015at 1203.944 kb on + strand, within Rru_A1015at 1203.944 kb on + strand, within Rru_A1015at 1203.945 kb on - strand, within Rru_A1015at 1203.945 kb on - strand, within Rru_A1015at 1203.945 kb on - strand, within Rru_A1015at 1204.251 kb on - strand, within Rru_A1015at 1204.251 kb on - strand, within Rru_A1015at 1204.251 kb on - strand, within Rru_A1015at 1204.307 kb on + strandat 1204.307 kb on + strandat 1204.307 kb on + strandat 1204.308 kb on - strandat 1204.308 kb on - strandat 1204.334 kb on + strandat 1204.334 kb on + strandat 1204.334 kb on + strandat 1204.334 kb on + strandat 1204.334 kb on + strandat 1204.335 kb on - strandat 1204.335 kb on - strandat 1204.390 kb on + strandat 1204.391 kb on - strandat 1204.391 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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1,202,284 + Rru_A1013 0.57 -0.0
1,202,285 - Rru_A1013 0.57 +0.2
1,202,285 - Rru_A1013 0.57 +0.2
1,202,285 - Rru_A1013 0.57 -0.0
1,202,320 - Rru_A1013 0.59 -1.6
1,202,398 + Rru_A1013 0.64 -0.0
1,202,399 - Rru_A1013 0.64 -1.0
1,202,400 + Rru_A1013 0.64 -0.0
1,202,400 + Rru_A1013 0.64 -0.0
1,202,401 - Rru_A1013 0.64 -0.0
1,202,401 - Rru_A1013 0.64 -0.0
1,202,401 - Rru_A1013 0.64 -0.2
1,202,401 - Rru_A1013 0.64 +0.3
1,202,587 + Rru_A1013 0.74 +0.4
1,202,700 + Rru_A1013 0.80 -0.2
1,202,840 - Rru_A1013 0.88 -0.0
1,202,892 + -0.0
1,202,960 - +1.2
1,203,224 + Rru_A1014 0.32 +0.8
1,203,224 + Rru_A1014 0.32 +1.2
1,203,224 + Rru_A1014 0.32 -0.0
1,203,224 + Rru_A1014 0.32 -0.0
1,203,224 + Rru_A1014 0.32 -0.0
1,203,225 - Rru_A1014 0.33 +0.8
1,203,225 - Rru_A1014 0.33 -0.0
1,203,480 - +0.2
1,203,944 + Rru_A1015 0.47 -1.0
1,203,944 + Rru_A1015 0.47 -0.0
1,203,944 + Rru_A1015 0.47 -0.2
1,203,945 - Rru_A1015 0.47 -0.4
1,203,945 - Rru_A1015 0.47 -0.0
1,203,945 - Rru_A1015 0.47 -0.0
1,204,251 - Rru_A1015 0.83 -0.0
1,204,251 - Rru_A1015 0.83 +0.2
1,204,251 - Rru_A1015 0.83 +1.0
1,204,307 + -0.0
1,204,307 + -0.0
1,204,307 + -0.0
1,204,308 - +1.2
1,204,308 - -0.0
1,204,334 + -0.0
1,204,334 + -1.0
1,204,334 + -0.6
1,204,334 + -0.0
1,204,334 + -1.0
1,204,335 - -0.9
1,204,335 - -0.0
1,204,390 + -0.0
1,204,391 - +0.4
1,204,391 - -0.0

Or see this region's nucleotide sequence