Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1001

Experiment: acetate; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate; Light intensity 9 uM
1,186,583	+		Rru_A0999	0.59	+0.1
1,186,584	-		Rru_A0999	0.60	+0.0
1,186,584	-		Rru_A0999	0.60	+0.0
1,186,640	+		Rru_A0999	0.66	+0.0
1,186,640	+		Rru_A0999	0.66	+0.7
1,186,641	-		Rru_A0999	0.66	+1.4
1,186,641	-		Rru_A0999	0.66	+1.3
1,186,763	+		Rru_A0999	0.80	+1.3
1,186,763	+		Rru_A0999	0.80	+1.0
1,186,763	+		Rru_A0999	0.80	+0.0
1,186,764	-		Rru_A0999	0.81	+0.0
1,186,764	-		Rru_A0999	0.81	+0.4
1,186,764	-		Rru_A0999	0.81	+0.6
1,186,764	-		Rru_A0999	0.81	+0.0
1,186,764	-		Rru_A0999	0.81	+1.0
1,186,764	-		Rru_A0999	0.81	+0.0
1,186,802	+		Rru_A0999	0.85	+1.1
1,186,884	+				+1.3
1,186,884	+				+0.7
1,186,884	+				-1.0
1,186,885	-				+0.0
1,187,008	+		Rru_A1000	0.22	+2.6
1,187,008	+		Rru_A1000	0.22	+0.1
1,187,008	+		Rru_A1000	0.22	+0.4
1,187,009	-		Rru_A1000	0.22	+0.0
1,187,009	-		Rru_A1000	0.22	+0.1
1,187,009	-		Rru_A1000	0.22	+0.0
1,187,009	-		Rru_A1000	0.22	+0.7
1,187,162	+		Rru_A1000	0.70	+0.0
1,187,213	+		Rru_A1000	0.87	+1.1
1,187,214	-		Rru_A1000	0.87	+0.4
1,187,214	-		Rru_A1000	0.87	+0.0
1,187,253	-				+0.0
1,187,253	-				+0.0
1,187,280	+				-1.6
1,187,280	+				+0.0
1,187,344	+				+0.3
1,187,344	+				+0.0
1,187,344	+				+0.3
1,187,344	+				+0.0
1,187,346	+				+0.8
1,187,346	+				-0.0
1,187,346	+				+0.0
1,187,346	+				+0.1
1,187,346	+				+0.0
1,187,346	+				+0.5
1,187,347	-				+0.2
1,187,347	-				-1.6
1,187,347	-				+0.0
1,187,347	-				-0.2
1,187,355	+				-0.2
1,187,356	-				+0.2
1,187,385	-				+0.0
1,187,385	-				+1.3
1,187,754	+		Rru_A1001	0.41	+0.0
1,187,755	-		Rru_A1001	0.41	+1.7
1,187,939	-		Rru_A1001	0.64	+1.1
1,187,962	-		Rru_A1001	0.67	-1.4
1,188,120	+		Rru_A1001	0.87	-0.3
1,188,120	+		Rru_A1001	0.87	+1.2
1,188,121	-		Rru_A1001	0.87	+0.7
1,188,230	+				+0.0
1,188,231	-				+0.0
1,188,247	-				+0.0
1,188,276	-				+0.3
1,188,326	+				+0.0
1,188,326	+				+0.0
1,188,326	+				-1.0
1,188,326	+				-1.0
1,188,326	+				+0.0
1,188,327	-				+0.0
1,188,327	-				+0.3
1,188,327	-				+0.6
1,188,327	-				+1.0
1,188,390	+		Rru_A1002	0.15	+0.1
1,188,424	-		Rru_A1002	0.18	-0.1
1,188,594	+		Rru_A1002	0.33	+0.2
1,188,594	+		Rru_A1002	0.33	-0.5
1,188,594	+		Rru_A1002	0.33	-0.5
1,188,595	-		Rru_A1002	0.33	+0.0
1,188,596	+		Rru_A1002	0.33	+0.1
1,188,596	+		Rru_A1002	0.33	+0.0
1,188,596	+		Rru_A1002	0.33	+0.0
1,188,596	+		Rru_A1002	0.33	+0.0
1,188,596	+		Rru_A1002	0.33	+0.0
1,188,597	-		Rru_A1002	0.34	+0.5
1,188,597	-		Rru_A1002	0.34	+0.5
1,188,597	-		Rru_A1002	0.34	+0.0
1,188,597	-		Rru_A1002	0.34	+0.0
1,188,597	-		Rru_A1002	0.34	+0.0
1,188,619	-		Rru_A1002	0.36	-1.0
1,188,652	-		Rru_A1002	0.39	+0.7
1,188,830	+		Rru_A1002	0.55	+0.1
1,188,830	+		Rru_A1002	0.55	+0.4
1,188,830	+		Rru_A1002	0.55	+0.5
1,188,831	-		Rru_A1002	0.55	+0.0
1,188,887	-		Rru_A1002	0.60	-0.2
1,189,064	+		Rru_A1002	0.76	+0.2
1,189,064	+		Rru_A1002	0.76	-0.1
1,189,065	-		Rru_A1002	0.76	-0.4
1,189,065	-		Rru_A1002	0.76	-0.1