Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0999

Experiment: acetate; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate; Light intensity 9 uM
1,185,169	+		Rru_A0996	0.53	+0.2
1,185,169	+		Rru_A0996	0.53	+0.0
1,185,170	-		Rru_A0996	0.53	+0.2
1,185,397	+		Rru_A0996	0.80	+0.2
1,185,397	+		Rru_A0996	0.80	+0.2
1,185,450	+		Rru_A0996	0.87	+0.5
1,185,450	+		Rru_A0996	0.87	+0.0
1,185,613	+		Rru_A0997	0.17	+0.0
1,185,613	+		Rru_A0997	0.17	+0.2
1,185,613	+		Rru_A0997	0.17	-0.0
1,185,614	-		Rru_A0997	0.17	+0.0
1,185,614	-		Rru_A0997	0.17	+0.0
1,185,636	+		Rru_A0997	0.24	+0.2
1,185,665	+		Rru_A0997	0.34	-0.1
1,185,665	+		Rru_A0997	0.34	+0.0
1,185,665	+		Rru_A0997	0.34	+0.5
1,185,666	-		Rru_A0997	0.35	+0.3
1,185,666	-		Rru_A0997	0.35	+0.8
1,185,735	+		Rru_A0997	0.58	+0.0
1,185,736	-		Rru_A0997	0.59	+0.0
1,185,736	-		Rru_A0997	0.59	+0.2
1,185,768	+		Rru_A0997	0.69	-0.4
1,185,768	+		Rru_A0997	0.69	+0.3
1,185,768	+		Rru_A0997	0.69	+0.4
1,185,769	-		Rru_A0997	0.70	+0.0
1,185,769	-		Rru_A0997	0.70	+0.0
1,185,771	+		Rru_A0997	0.70	+0.0
1,185,771	+		Rru_A0997	0.70	+1.0
1,185,771	+		Rru_A0997	0.70	+0.0
1,185,772	-		Rru_A0997	0.71	+0.5
1,185,772	-		Rru_A0997	0.71	-1.2
1,185,777	+		Rru_A0997	0.72	+0.1
1,185,777	+		Rru_A0997	0.72	-0.1
1,185,778	-		Rru_A0997	0.73	+0.7
1,185,778	-		Rru_A0997	0.73	+0.0
1,185,778	-		Rru_A0997	0.73	+0.9
1,185,778	-		Rru_A0997	0.73	+0.0
1,185,896	+		Rru_A0998	0.19	+0.3
1,185,897	-		Rru_A0998	0.20	-0.1
1,185,897	-		Rru_A0998	0.20	+0.2
1,185,897	-		Rru_A0998	0.20	+0.9
1,186,287	-		Rru_A0999	0.25	+0.6
1,186,298	+		Rru_A0999	0.26	+0.9
1,186,299	-		Rru_A0999	0.26	+0.0
1,186,299	-		Rru_A0999	0.26	+0.0
1,186,299	-		Rru_A0999	0.26	+0.0
1,186,421	+		Rru_A0999	0.41	+0.4
1,186,421	+		Rru_A0999	0.41	+0.0
1,186,421	+		Rru_A0999	0.41	+1.4
1,186,421	+		Rru_A0999	0.41	-1.0
1,186,422	-		Rru_A0999	0.41	-0.5
1,186,422	-		Rru_A0999	0.41	+0.2
1,186,422	-		Rru_A0999	0.41	+1.4
1,186,422	-		Rru_A0999	0.41	-1.3
1,186,583	+		Rru_A0999	0.59	+0.1
1,186,584	-		Rru_A0999	0.60	+0.0
1,186,584	-		Rru_A0999	0.60	+0.0
1,186,640	+		Rru_A0999	0.66	+0.0
1,186,640	+		Rru_A0999	0.66	+0.7
1,186,641	-		Rru_A0999	0.66	+1.4
1,186,641	-		Rru_A0999	0.66	+1.3
1,186,763	+		Rru_A0999	0.80	+1.3
1,186,763	+		Rru_A0999	0.80	+1.0
1,186,763	+		Rru_A0999	0.80	+0.0
1,186,764	-		Rru_A0999	0.81	+0.0
1,186,764	-		Rru_A0999	0.81	+0.4
1,186,764	-		Rru_A0999	0.81	+0.6
1,186,764	-		Rru_A0999	0.81	+0.0
1,186,764	-		Rru_A0999	0.81	+1.0
1,186,764	-		Rru_A0999	0.81	+0.0
1,186,802	+		Rru_A0999	0.85	+1.1
1,186,884	+				+1.3
1,186,884	+				+0.7
1,186,884	+				-1.0
1,186,885	-				+0.0
1,187,008	+		Rru_A1000	0.22	+2.6
1,187,008	+		Rru_A1000	0.22	+0.1
1,187,008	+		Rru_A1000	0.22	+0.4
1,187,009	-		Rru_A1000	0.22	+0.0
1,187,009	-		Rru_A1000	0.22	+0.1
1,187,009	-		Rru_A1000	0.22	+0.0
1,187,009	-		Rru_A1000	0.22	+0.7
1,187,162	+		Rru_A1000	0.70	+0.0
1,187,213	+		Rru_A1000	0.87	+1.1
1,187,214	-		Rru_A1000	0.87	+0.4
1,187,214	-		Rru_A1000	0.87	+0.0
1,187,253	-				+0.0
1,187,253	-				+0.0
1,187,280	+				-1.6
1,187,280	+				+0.0
1,187,344	+				+0.3
1,187,344	+				+0.0
1,187,344	+				+0.3
1,187,344	+				+0.0
1,187,346	+				+0.8
1,187,346	+				-0.0
1,187,346	+				+0.0
1,187,346	+				+0.1
1,187,346	+				+0.0
1,187,346	+				+0.5
1,187,347	-				+0.2
1,187,347	-				-1.6
1,187,347	-				+0.0
1,187,347	-				-0.2
1,187,355	+				-0.2
1,187,356	-				+0.2
1,187,385	-				+0.0
1,187,385	-				+1.3
1,187,754	+		Rru_A1001	0.41	+0.0
1,187,755	-		Rru_A1001	0.41	+1.7