Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0969 and Rru_A0970 are separated by 44 nucleotides Rru_A0970 and Rru_A0971 overlap by 4 nucleotides Rru_A0971 and Rru_A0972 overlap by 106 nucleotides
Rru_A0969: Rru_A0969 - VWA containing CoxE-like (NCBI), at 1,153,951 to 1,155,216
_A0969
Rru_A0970: Rru_A0970 - hypothetical protein (NCBI), at 1,155,261 to 1,155,911
_A0970
Rru_A0971: Rru_A0971 - hypothetical protein (NCBI), at 1,155,908 to 1,157,548
_A0971
Rru_A0972: Rru_A0972 - Prephenate dehydrogenase (NCBI), at 1,157,443 to 1,158,396
_A0972
Position (kb) 1155
1156
1157
1158 Strain fitness (log2 ratio) -1
0
1
2 at 1155.031 kb on + strand, within Rru_A0969 at 1155.105 kb on + strand at 1155.106 kb on - strand at 1155.106 kb on - strand at 1155.106 kb on - strand at 1155.215 kb on - strand at 1155.215 kb on - strand at 1155.400 kb on - strand, within Rru_A0970 at 1155.693 kb on + strand, within Rru_A0970 at 1155.693 kb on + strand, within Rru_A0970 at 1155.693 kb on + strand, within Rru_A0970 at 1155.693 kb on + strand, within Rru_A0970 at 1155.694 kb on - strand, within Rru_A0970 at 1155.694 kb on - strand, within Rru_A0970 at 1155.694 kb on - strand, within Rru_A0970 at 1155.694 kb on - strand, within Rru_A0970 at 1155.694 kb on - strand, within Rru_A0970 at 1155.694 kb on - strand, within Rru_A0970 at 1155.694 kb on - strand, within Rru_A0970 at 1155.694 kb on - strand, within Rru_A0970 at 1155.694 kb on - strand, within Rru_A0970 at 1156.463 kb on - strand, within Rru_A0971 at 1156.463 kb on - strand, within Rru_A0971 at 1156.880 kb on - strand, within Rru_A0971 at 1157.249 kb on - strand, within Rru_A0971 at 1157.249 kb on - strand, within Rru_A0971 at 1157.275 kb on - strand, within Rru_A0971 at 1157.676 kb on + strand, within Rru_A0972 at 1157.783 kb on + strand, within Rru_A0972 at 1157.783 kb on + strand, within Rru_A0972 at 1157.783 kb on + strand, within Rru_A0972 at 1157.784 kb on - strand, within Rru_A0972 at 1157.784 kb on - strand, within Rru_A0972 at 1157.784 kb on - strand, within Rru_A0972 at 1157.784 kb on - strand, within Rru_A0972 at 1157.784 kb on - strand, within Rru_A0972 at 1157.784 kb on - strand, within Rru_A0972 at 1157.784 kb on - strand, within Rru_A0972 at 1157.784 kb on - strand, within Rru_A0972 at 1157.784 kb on - strand, within Rru_A0972 at 1158.027 kb on + strand, within Rru_A0972 at 1158.027 kb on + strand, within Rru_A0972 at 1158.028 kb on - strand, within Rru_A0972 at 1158.504 kb on - strand at 1158.518 kb on + strand at 1158.521 kb on + strand at 1158.521 kb on + strand at 1158.521 kb on + strand at 1158.521 kb on + strand at 1158.521 kb on + strand at 1158.521 kb on + strand at 1158.521 kb on + strand at 1158.522 kb on - strand at 1158.522 kb on - strand at 1158.522 kb on - strand at 1158.522 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 1,155,031 + Rru_A0969 0.85 -0.3 1,155,105 + +0.0 1,155,106 - +1.2 1,155,106 - -1.0 1,155,106 - -0.6 1,155,215 - +0.0 1,155,215 - +0.0 1,155,400 - Rru_A0970 0.21 +0.2 1,155,693 + Rru_A0970 0.66 +0.3 1,155,693 + Rru_A0970 0.66 +0.6 1,155,693 + Rru_A0970 0.66 +0.7 1,155,693 + Rru_A0970 0.66 +0.4 1,155,694 - Rru_A0970 0.67 +1.0 1,155,694 - Rru_A0970 0.67 +0.0 1,155,694 - Rru_A0970 0.67 +0.0 1,155,694 - Rru_A0970 0.67 +0.6 1,155,694 - Rru_A0970 0.67 +0.2 1,155,694 - Rru_A0970 0.67 +0.0 1,155,694 - Rru_A0970 0.67 +1.9 1,155,694 - Rru_A0970 0.67 +1.3 1,155,694 - Rru_A0970 0.67 +0.9 1,156,463 - Rru_A0971 0.34 +0.2 1,156,463 - Rru_A0971 0.34 +0.0 1,156,880 - Rru_A0971 0.59 +0.0 1,157,249 - Rru_A0971 0.82 +0.0 1,157,249 - Rru_A0971 0.82 +0.0 1,157,275 - Rru_A0971 0.83 +1.6 1,157,676 + Rru_A0972 0.24 -0.3 1,157,783 + Rru_A0972 0.36 +0.0 1,157,783 + Rru_A0972 0.36 +0.3 1,157,783 + Rru_A0972 0.36 -0.3 1,157,784 - Rru_A0972 0.36 +0.6 1,157,784 - Rru_A0972 0.36 +0.0 1,157,784 - Rru_A0972 0.36 -1.6 1,157,784 - Rru_A0972 0.36 +0.0 1,157,784 - Rru_A0972 0.36 +0.0 1,157,784 - Rru_A0972 0.36 +0.6 1,157,784 - Rru_A0972 0.36 +0.0 1,157,784 - Rru_A0972 0.36 +0.7 1,157,784 - Rru_A0972 0.36 +0.0 1,158,027 + Rru_A0972 0.61 +0.0 1,158,027 + Rru_A0972 0.61 -0.6 1,158,028 - Rru_A0972 0.61 +0.4 1,158,504 - +0.0 1,158,518 + -0.1 1,158,521 + +0.0 1,158,521 + -1.0 1,158,521 + +0.6 1,158,521 + +0.3 1,158,521 + +0.4 1,158,521 + +0.0 1,158,521 + +1.7 1,158,522 - +0.2 1,158,522 - +0.1 1,158,522 - +0.5 1,158,522 - +0.4
Or see this region's nucleotide sequence