Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0970
Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | acetate; Light intensity 9 uM |
---|---|---|---|---|---|
remove | |||||
1,154,450 | - | Rru_A0969 | 0.39 | -0.5 | |
1,154,674 | + | Rru_A0969 | 0.57 | +0.7 | |
1,155,031 | + | Rru_A0969 | 0.85 | -0.3 | |
1,155,105 | + | +0.0 | |||
1,155,106 | - | +1.2 | |||
1,155,106 | - | -1.0 | |||
1,155,106 | - | -0.6 | |||
1,155,215 | - | +0.0 | |||
1,155,215 | - | +0.0 | |||
1,155,400 | - | Rru_A0970 | 0.21 | +0.2 | |
1,155,693 | + | Rru_A0970 | 0.66 | +0.3 | |
1,155,693 | + | Rru_A0970 | 0.66 | +0.6 | |
1,155,693 | + | Rru_A0970 | 0.66 | +0.7 | |
1,155,693 | + | Rru_A0970 | 0.66 | +0.4 | |
1,155,694 | - | Rru_A0970 | 0.67 | +1.0 | |
1,155,694 | - | Rru_A0970 | 0.67 | +0.0 | |
1,155,694 | - | Rru_A0970 | 0.67 | +0.0 | |
1,155,694 | - | Rru_A0970 | 0.67 | +0.6 | |
1,155,694 | - | Rru_A0970 | 0.67 | +0.2 | |
1,155,694 | - | Rru_A0970 | 0.67 | +0.0 | |
1,155,694 | - | Rru_A0970 | 0.67 | +1.9 | |
1,155,694 | - | Rru_A0970 | 0.67 | +1.3 | |
1,155,694 | - | Rru_A0970 | 0.67 | +0.9 | |
1,156,463 | - | Rru_A0971 | 0.34 | +0.2 | |
1,156,463 | - | Rru_A0971 | 0.34 | +0.0 | |
1,156,880 | - | Rru_A0971 | 0.59 | +0.0 |
Or see this region's nucleotide sequence