Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0903

Experiment: acetate; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate; Light intensity 9 uM
1,077,260	-				-2.0
1,077,264	+				-1.0
1,077,265	-				-1.0
1,077,265	-				-1.3
1,077,552	-				+0.0
1,077,695	+		Rru_A0902	0.17	+0.0
1,077,766	+		Rru_A0902	0.29	+0.0
1,077,766	+		Rru_A0902	0.29	-0.4
1,077,766	+		Rru_A0902	0.29	+0.0
1,077,767	-		Rru_A0902	0.29	-1.2
1,077,767	-		Rru_A0902	0.29	+0.3
1,077,767	-		Rru_A0902	0.29	-0.6
1,077,767	-		Rru_A0902	0.29	-0.4
1,077,845	-		Rru_A0902	0.43	-0.9
1,078,006	+		Rru_A0902	0.71	-2.7
1,078,048	+		Rru_A0902	0.78	-1.6
1,078,048	+		Rru_A0902	0.78	+0.0
1,078,049	-		Rru_A0902	0.78	+0.3
1,078,049	-		Rru_A0902	0.78	-0.8
1,078,049	-		Rru_A0902	0.78	+0.0
1,078,049	-		Rru_A0902	0.78	+0.3
1,078,226	+				+0.0
1,078,227	-				+0.0
1,078,227	-				-1.0
1,078,280	-				+0.5
1,078,316	+				+0.0
1,078,316	+				-0.2
1,078,316	+				-0.2
1,078,317	-				+1.5
1,078,317	-				-0.3
1,078,355	+				+0.3
1,078,355	+				+1.2
1,078,356	-				-0.2
1,078,356	-				-2.3
1,078,358	-				+0.8
1,078,358	-				+0.0
1,078,613	+		Rru_A0903	0.15	-0.6
1,078,614	-		Rru_A0903	0.15	-1.6
1,078,652	+		Rru_A0903	0.16	-0.1
1,078,652	+		Rru_A0903	0.16	+0.0
1,078,652	+		Rru_A0903	0.16	+0.0
1,078,652	+		Rru_A0903	0.16	-3.2
1,078,652	+		Rru_A0903	0.16	+0.0
1,078,653	-		Rru_A0903	0.16	+0.0
1,078,653	-		Rru_A0903	0.16	+0.6
1,078,653	-		Rru_A0903	0.16	-0.7
1,078,653	-		Rru_A0903	0.16	+0.0
1,078,653	-		Rru_A0903	0.16	-0.5
1,078,654	+		Rru_A0903	0.16	+0.0
1,078,654	+		Rru_A0903	0.16	+0.0
1,078,654	+		Rru_A0903	0.16	-0.9
1,078,654	+		Rru_A0903	0.16	-1.6
1,078,654	+		Rru_A0903	0.16	+0.5
1,078,655	-		Rru_A0903	0.16	+0.3
1,078,655	-		Rru_A0903	0.16	+0.0
1,078,655	-		Rru_A0903	0.16	+0.0
1,078,655	-		Rru_A0903	0.16	+0.4
1,078,710	-		Rru_A0903	0.18	+0.0
1,078,710	-		Rru_A0903	0.18	+1.0
1,078,710	-		Rru_A0903	0.18	+0.0
1,078,710	-		Rru_A0903	0.18	+0.0
1,078,716	-		Rru_A0903	0.19	+0.0
1,078,833	-		Rru_A0903	0.23	+0.3
1,078,853	+		Rru_A0903	0.24	+0.8
1,078,853	+		Rru_A0903	0.24	-1.4
1,078,853	+		Rru_A0903	0.24	+0.6
1,078,854	-		Rru_A0903	0.24	+0.0
1,078,874	+		Rru_A0903	0.25	+0.0
1,078,876	+		Rru_A0903	0.25	-0.5
1,078,877	-		Rru_A0903	0.25	+0.6
1,078,877	-		Rru_A0903	0.25	+0.0
1,079,021	+		Rru_A0903	0.31	+0.0
1,079,021	+		Rru_A0903	0.31	+1.5
1,079,021	+		Rru_A0903	0.31	+1.3
1,079,021	+		Rru_A0903	0.31	+0.5
1,079,021	+		Rru_A0903	0.31	-0.2
1,079,021	+		Rru_A0903	0.31	+0.0
1,079,022	-		Rru_A0903	0.31	+0.0
1,079,022	-		Rru_A0903	0.31	-0.6
1,079,022	-		Rru_A0903	0.31	+0.4
1,079,111	+		Rru_A0903	0.34	+0.0
1,079,111	+		Rru_A0903	0.34	-0.2
1,079,112	-		Rru_A0903	0.34	+0.1
1,079,112	-		Rru_A0903	0.34	+0.0
1,079,112	-		Rru_A0903	0.34	+0.0
1,079,112	-		Rru_A0903	0.34	+0.1
1,079,112	-		Rru_A0903	0.34	-1.6
1,079,117	+		Rru_A0903	0.34	-2.0
1,079,117	+		Rru_A0903	0.34	-0.6
1,079,117	+		Rru_A0903	0.34	+0.0
1,079,117	+		Rru_A0903	0.34	-0.2
1,079,117	+		Rru_A0903	0.34	-1.1
1,079,117	+		Rru_A0903	0.34	+0.1
1,079,118	-		Rru_A0903	0.35	+0.0
1,079,118	-		Rru_A0903	0.35	+0.0
1,079,118	-		Rru_A0903	0.35	+0.0
1,079,118	-		Rru_A0903	0.35	+0.0
1,079,118	-		Rru_A0903	0.35	+0.0
1,079,118	-		Rru_A0903	0.35	+0.5
1,079,118	-		Rru_A0903	0.35	+0.0
1,079,118	-		Rru_A0903	0.35	+0.4
1,079,318	+		Rru_A0903	0.42	-1.8
1,079,318	+		Rru_A0903	0.42	-0.3
1,079,318	+		Rru_A0903	0.42	+0.0
1,079,318	+		Rru_A0903	0.42	+0.0
1,079,319	-		Rru_A0903	0.42	+0.3
1,079,319	-		Rru_A0903	0.42	+0.0
1,079,319	-		Rru_A0903	0.42	+0.0
1,079,319	-		Rru_A0903	0.42	+0.2
1,079,319	-		Rru_A0903	0.42	-0.3
1,079,456	+		Rru_A0903	0.48	+0.0
1,079,456	+		Rru_A0903	0.48	+0.0
1,079,456	+		Rru_A0903	0.48	+0.0
1,079,456	+		Rru_A0903	0.48	+0.0
1,079,457	-		Rru_A0903	0.48	-0.0
1,079,457	-		Rru_A0903	0.48	-1.0
1,079,457	-		Rru_A0903	0.48	+0.5
1,079,457	-		Rru_A0903	0.48	+0.6
1,079,457	-		Rru_A0903	0.48	+1.4
1,079,522	+		Rru_A0903	0.50	-3.2
1,079,522	+		Rru_A0903	0.50	-0.4
1,079,522	+		Rru_A0903	0.50	+0.0
1,079,523	-		Rru_A0903	0.50	+0.0
1,079,702	+		Rru_A0903	0.57	-2.2
1,079,729	+		Rru_A0903	0.59	-0.9
1,079,729	+		Rru_A0903	0.59	+1.6
1,079,730	-		Rru_A0903	0.59	+1.2
1,079,741	+		Rru_A0903	0.59	-3.3
1,079,741	+		Rru_A0903	0.59	-1.0
1,079,741	+		Rru_A0903	0.59	+0.0
1,079,742	-		Rru_A0903	0.59	+0.2
1,079,867	+		Rru_A0903	0.64	-2.6
1,079,867	+		Rru_A0903	0.64	-1.8
1,079,868	-		Rru_A0903	0.64	-0.1
1,079,868	-		Rru_A0903	0.64	+0.3
1,079,868	-		Rru_A0903	0.64	+0.0
1,079,921	+		Rru_A0903	0.66	-2.2
1,080,128	+		Rru_A0903	0.74	+0.0
1,080,129	-		Rru_A0903	0.74	+0.0
1,080,129	-		Rru_A0903	0.74	+0.3
1,080,129	-		Rru_A0903	0.74	+0.0
1,080,182	+		Rru_A0903	0.76	-2.4
1,080,297	-		Rru_A0903	0.81	-0.2
1,080,593	+				-2.8
1,080,611	-				-1.0
1,080,679	+				-0.6
1,080,680	-				+0.3
1,080,780	-				-0.6
1,080,926	+				-0.7
1,080,926	+				+0.0
1,080,927	-				+0.0
1,080,927	-				+0.0
1,081,312	+		Rru_A0904	0.36	+0.0
1,081,313	-		Rru_A0904	0.36	+0.5
1,081,313	-		Rru_A0904	0.36	-0.7
1,081,474	+		Rru_A0904	0.50	-2.8
1,081,474	+		Rru_A0904	0.50	+0.0
1,081,474	+		Rru_A0904	0.50	+0.0
1,081,475	-		Rru_A0904	0.50	+0.0
1,081,475	-		Rru_A0904	0.50	+0.8
1,081,475	-		Rru_A0904	0.50	+1.1
1,081,475	-		Rru_A0904	0.50	+0.2
1,081,475	-		Rru_A0904	0.50	+0.0
1,081,600	-		Rru_A0904	0.61	+0.0
1,081,738	+		Rru_A0904	0.73	+0.0