Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0890

Experiment: acetate; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate; Light intensity 9 uM
1,065,728	+		Rru_A0888	0.50	+0.8
1,065,728	+		Rru_A0888	0.50	+0.4
1,065,728	+		Rru_A0888	0.50	-0.4
1,065,729	-		Rru_A0888	0.50	-0.0
1,065,729	-		Rru_A0888	0.50	-0.0
1,065,729	-		Rru_A0888	0.50	+0.2
1,065,729	-		Rru_A0888	0.50	+0.5
1,065,729	-		Rru_A0888	0.50	-1.0
1,065,729	-		Rru_A0888	0.50	+0.5
1,065,825	-		Rru_A0888	0.66	+0.7
1,065,825	-		Rru_A0888	0.66	-0.0
1,065,899	+		Rru_A0888	0.78	+0.3
1,065,899	+		Rru_A0888	0.78	+0.3
1,065,899	+		Rru_A0888	0.78	-0.0
1,065,900	-		Rru_A0888	0.78	+0.2
1,065,900	-		Rru_A0888	0.78	+0.1
1,065,900	-		Rru_A0888	0.78	+0.9
1,065,960	-		Rru_A0888	0.88	+0.7
1,066,065	+				+1.3
1,066,065	+				+0.6
1,066,065	+				+1.6
1,066,066	-				+0.2
1,066,066	-				+0.2
1,066,066	-				-0.0
1,066,066	-				+0.7
1,066,158	+				-0.2
1,066,257	-				+0.1
1,066,772	+				+0.1
1,066,877	-		Rru_A0890	0.20	-0.0
1,066,903	+		Rru_A0890	0.23	-0.0
1,066,904	-		Rru_A0890	0.23	-1.0
1,067,206	+		Rru_A0890	0.52	-0.0
1,067,282	+		Rru_A0890	0.60	-0.0
1,067,379	-		Rru_A0890	0.69	+0.7
1,067,379	-		Rru_A0890	0.69	-0.1
1,067,442	-		Rru_A0890	0.76	+0.4
1,067,482	+		Rru_A0890	0.79	-0.0
1,067,483	-		Rru_A0890	0.80	-0.0
1,067,711	+				+1.0
1,067,712	-				+0.2
1,067,732	-				+0.4
1,067,748	-				-0.0
1,067,949	+		Rru_A0891	0.26	-0.0
1,068,296	-				+1.1
1,068,352	+				-0.5
1,068,352	+				-0.0
1,068,352	+				-1.8
1,068,353	-				-0.0
1,068,353	-				-0.0
1,068,386	-				-0.1
1,068,386	-				-0.1
1,068,556	+		Rru_A0892	0.19	+0.3
1,068,557	-		Rru_A0892	0.19	-0.0
1,068,557	-		Rru_A0892	0.19	-0.0
1,068,557	-		Rru_A0892	0.19	+0.2
1,068,557	-		Rru_A0892	0.19	-0.0
1,068,557	-		Rru_A0892	0.19	-0.0
1,068,686	-		Rru_A0892	0.30	+0.1
1,068,686	-		Rru_A0892	0.30	-0.0