Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0888

Experiment: acetate; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate; Light intensity 9 uM
1,064,502	+		Rru_A0887	0.41	+0.3
1,064,503	-		Rru_A0887	0.41	-0.0
1,064,503	-		Rru_A0887	0.41	-0.0
1,064,503	-		Rru_A0887	0.41	-0.0
1,064,503	-		Rru_A0887	0.41	+0.7
1,064,503	-		Rru_A0887	0.41	-0.0
1,064,503	-		Rru_A0887	0.41	+1.3
1,064,503	-		Rru_A0887	0.41	-0.0
1,064,503	-		Rru_A0887	0.41	+0.4
1,064,504	+		Rru_A0887	0.41	+1.4
1,064,504	+		Rru_A0887	0.41	+0.2
1,064,504	+		Rru_A0887	0.41	+0.3
1,064,504	+		Rru_A0887	0.41	+0.8
1,064,505	-		Rru_A0887	0.42	+0.0
1,064,505	-		Rru_A0887	0.42	-0.2
1,064,505	-		Rru_A0887	0.42	-0.0
1,064,505	-		Rru_A0887	0.42	+1.3
1,064,505	-		Rru_A0887	0.42	-1.3
1,064,747	+		Rru_A0887	0.62	-0.0
1,064,873	+		Rru_A0887	0.72	+0.8
1,064,874	-		Rru_A0887	0.72	+0.6
1,065,359	+				+0.0
1,065,360	-				-0.0
1,065,360	-				+1.2
1,065,370	+				+0.3
1,065,370	+				-0.3
1,065,530	+		Rru_A0888	0.18	-0.0
1,065,530	+		Rru_A0888	0.18	-0.3
1,065,531	-		Rru_A0888	0.18	-1.0
1,065,531	-		Rru_A0888	0.18	-0.0
1,065,534	+		Rru_A0888	0.18	-0.0
1,065,534	+		Rru_A0888	0.18	-1.0
1,065,534	+		Rru_A0888	0.18	-0.0
1,065,534	+		Rru_A0888	0.18	+0.4
1,065,534	+		Rru_A0888	0.18	+0.2
1,065,534	+		Rru_A0888	0.18	-0.2
1,065,535	-		Rru_A0888	0.19	-0.6
1,065,536	+		Rru_A0888	0.19	+0.5
1,065,536	+		Rru_A0888	0.19	+0.2
1,065,536	+		Rru_A0888	0.19	+1.0
1,065,536	+		Rru_A0888	0.19	+0.0
1,065,536	+		Rru_A0888	0.19	-0.0
1,065,536	+		Rru_A0888	0.19	+0.3
1,065,536	+		Rru_A0888	0.19	+0.2
1,065,536	+		Rru_A0888	0.19	-0.1
1,065,536	+		Rru_A0888	0.19	-0.0
1,065,537	-		Rru_A0888	0.19	+0.4
1,065,537	-		Rru_A0888	0.19	+1.7
1,065,537	-		Rru_A0888	0.19	-0.3
1,065,537	-		Rru_A0888	0.19	+0.4
1,065,537	-		Rru_A0888	0.19	-0.0
1,065,537	-		Rru_A0888	0.19	-0.0
1,065,537	-		Rru_A0888	0.19	+1.7
1,065,537	-		Rru_A0888	0.19	-0.0
1,065,537	-		Rru_A0888	0.19	+0.2
1,065,537	-		Rru_A0888	0.19	+1.1
1,065,537	-		Rru_A0888	0.19	-0.4
1,065,537	-		Rru_A0888	0.19	+0.2
1,065,598	-		Rru_A0888	0.29	-1.0
1,065,598	-		Rru_A0888	0.29	-0.0
1,065,617	+		Rru_A0888	0.32	-0.1
1,065,617	+		Rru_A0888	0.32	-0.0
1,065,617	+		Rru_A0888	0.32	-0.1
1,065,617	+		Rru_A0888	0.32	-0.1
1,065,618	-		Rru_A0888	0.32	-0.0
1,065,620	+		Rru_A0888	0.33	-0.0
1,065,621	-		Rru_A0888	0.33	-0.9
1,065,621	-		Rru_A0888	0.33	-0.2
1,065,621	-		Rru_A0888	0.33	-0.5
1,065,728	+		Rru_A0888	0.50	+0.8
1,065,728	+		Rru_A0888	0.50	+0.4
1,065,728	+		Rru_A0888	0.50	-0.4
1,065,729	-		Rru_A0888	0.50	-0.0
1,065,729	-		Rru_A0888	0.50	-0.0
1,065,729	-		Rru_A0888	0.50	+0.2
1,065,729	-		Rru_A0888	0.50	+0.5
1,065,729	-		Rru_A0888	0.50	-1.0
1,065,729	-		Rru_A0888	0.50	+0.5
1,065,825	-		Rru_A0888	0.66	+0.7
1,065,825	-		Rru_A0888	0.66	-0.0
1,065,899	+		Rru_A0888	0.78	+0.3
1,065,899	+		Rru_A0888	0.78	+0.3
1,065,899	+		Rru_A0888	0.78	-0.0
1,065,900	-		Rru_A0888	0.78	+0.2
1,065,900	-		Rru_A0888	0.78	+0.1
1,065,900	-		Rru_A0888	0.78	+0.9
1,065,960	-		Rru_A0888	0.88	+0.7
1,066,065	+				+1.3
1,066,065	+				+0.6
1,066,065	+				+1.6
1,066,066	-				+0.2
1,066,066	-				+0.2
1,066,066	-				-0.0
1,066,066	-				+0.7
1,066,158	+				-0.2
1,066,257	-				+0.1
1,066,772	+				+0.1
1,066,877	-		Rru_A0890	0.20	-0.0
1,066,903	+		Rru_A0890	0.23	-0.0
1,066,904	-		Rru_A0890	0.23	-1.0