Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0864

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0863 and Rru_A0864 are separated by 4 nucleotidesRru_A0864 and Rru_A0865 are separated by 373 nucleotides Rru_A0863: Rru_A0863 - ABC transporter, transmembrane region (NCBI), at 1,028,416 to 1,030,113 _A0863 Rru_A0864: Rru_A0864 - ABC transporter, transmembrane region (NCBI), at 1,030,118 to 1,031,929 _A0864 Rru_A0865: Rru_A0865 - TonB-dependent receptor (NCBI), at 1,032,303 to 1,034,465 _A0865 Position (kb) 1030 1031 1032Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1029.355 kb on + strand, within Rru_A0863at 1029.356 kb on - strand, within Rru_A0863at 1029.356 kb on - strand, within Rru_A0863at 1029.356 kb on - strand, within Rru_A0863at 1029.356 kb on - strand, within Rru_A0863at 1029.356 kb on - strand, within Rru_A0863at 1029.775 kb on + strand, within Rru_A0863at 1029.775 kb on + strand, within Rru_A0863at 1029.866 kb on + strand, within Rru_A0863at 1029.866 kb on + strand, within Rru_A0863at 1029.866 kb on + strand, within Rru_A0863at 1029.866 kb on + strand, within Rru_A0863at 1029.866 kb on + strand, within Rru_A0863at 1029.866 kb on + strand, within Rru_A0863at 1029.867 kb on - strand, within Rru_A0863at 1029.899 kb on + strand, within Rru_A0863at 1029.899 kb on + strand, within Rru_A0863at 1029.900 kb on - strand, within Rru_A0863at 1029.900 kb on - strand, within Rru_A0863at 1029.900 kb on - strand, within Rru_A0863at 1029.900 kb on - strand, within Rru_A0863at 1030.336 kb on - strand, within Rru_A0864at 1030.357 kb on - strand, within Rru_A0864at 1030.636 kb on + strand, within Rru_A0864at 1030.636 kb on + strand, within Rru_A0864at 1030.637 kb on - strand, within Rru_A0864at 1030.637 kb on - strand, within Rru_A0864at 1030.855 kb on - strand, within Rru_A0864at 1031.295 kb on + strand, within Rru_A0864at 1031.295 kb on + strand, within Rru_A0864at 1031.295 kb on + strand, within Rru_A0864at 1031.296 kb on - strand, within Rru_A0864at 1031.296 kb on - strand, within Rru_A0864at 1031.296 kb on - strand, within Rru_A0864at 1031.296 kb on - strand, within Rru_A0864at 1031.296 kb on - strand, within Rru_A0864at 1031.296 kb on - strand, within Rru_A0864at 1031.337 kb on + strand, within Rru_A0864at 1031.337 kb on + strand, within Rru_A0864at 1031.337 kb on + strand, within Rru_A0864at 1031.338 kb on - strand, within Rru_A0864at 1031.338 kb on - strand, within Rru_A0864at 1031.664 kb on + strand, within Rru_A0864at 1031.664 kb on + strand, within Rru_A0864at 1031.664 kb on + strand, within Rru_A0864at 1031.665 kb on - strand, within Rru_A0864at 1031.667 kb on + strand, within Rru_A0864at 1031.668 kb on - strand, within Rru_A0864at 1031.668 kb on - strand, within Rru_A0864at 1031.668 kb on - strand, within Rru_A0864at 1031.677 kb on + strand, within Rru_A0864at 1031.678 kb on - strand, within Rru_A0864at 1031.678 kb on - strand, within Rru_A0864at 1031.679 kb on + strand, within Rru_A0864at 1031.679 kb on + strand, within Rru_A0864at 1031.679 kb on + strand, within Rru_A0864at 1031.680 kb on - strand, within Rru_A0864at 1031.680 kb on - strand, within Rru_A0864at 1031.680 kb on - strand, within Rru_A0864at 1031.680 kb on - strand, within Rru_A0864at 1031.695 kb on + strand, within Rru_A0864at 1031.793 kb on + strandat 1031.793 kb on + strandat 1031.794 kb on - strandat 1031.948 kb on + strandat 1031.948 kb on + strandat 1031.949 kb on - strandat 1031.949 kb on - strandat 1032.053 kb on - strandat 1032.053 kb on - strandat 1032.076 kb on + strandat 1032.076 kb on + strandat 1032.077 kb on - strandat 1032.077 kb on - strandat 1032.077 kb on - strandat 1032.078 kb on + strandat 1032.078 kb on + strandat 1032.078 kb on + strandat 1032.078 kb on + strandat 1032.079 kb on - strandat 1032.135 kb on + strandat 1032.200 kb on - strandat 1032.240 kb on - strandat 1032.258 kb on + strandat 1032.298 kb on + strandat 1032.298 kb on + strandat 1032.299 kb on - strandat 1032.299 kb on - strandat 1032.299 kb on - strandat 1032.299 kb on - strandat 1032.299 kb on - strandat 1032.302 kb on + strandat 1032.302 kb on + strandat 1032.302 kb on + strandat 1032.303 kb on - strandat 1032.412 kb on + strandat 1032.413 kb on - strandat 1032.413 kb on - strandat 1032.413 kb on - strandat 1032.513 kb on + strandat 1032.513 kb on + strandat 1032.663 kb on + strand, within Rru_A0865at 1032.663 kb on + strand, within Rru_A0865at 1032.663 kb on + strand, within Rru_A0865at 1032.663 kb on + strand, within Rru_A0865at 1032.663 kb on + strand, within Rru_A0865at 1032.663 kb on + strand, within Rru_A0865at 1032.663 kb on + strand, within Rru_A0865at 1032.663 kb on + strand, within Rru_A0865at 1032.663 kb on + strand, within Rru_A0865at 1032.663 kb on + strand, within Rru_A0865at 1032.663 kb on + strand, within Rru_A0865at 1032.664 kb on - strand, within Rru_A0865at 1032.664 kb on - strand, within Rru_A0865at 1032.664 kb on - strand, within Rru_A0865at 1032.665 kb on + strand, within Rru_A0865at 1032.665 kb on + strand, within Rru_A0865at 1032.665 kb on + strand, within Rru_A0865at 1032.665 kb on + strand, within Rru_A0865at 1032.666 kb on - strand, within Rru_A0865at 1032.666 kb on - strand, within Rru_A0865at 1032.846 kb on + strand, within Rru_A0865at 1032.846 kb on + strand, within Rru_A0865at 1032.846 kb on + strand, within Rru_A0865at 1032.878 kb on + strand, within Rru_A0865at 1032.878 kb on + strand, within Rru_A0865at 1032.878 kb on + strand, within Rru_A0865at 1032.879 kb on - strand, within Rru_A0865

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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1,029,355 + Rru_A0863 0.55 +0.8
1,029,356 - Rru_A0863 0.55 -0.0
1,029,356 - Rru_A0863 0.55 +0.3
1,029,356 - Rru_A0863 0.55 -0.0
1,029,356 - Rru_A0863 0.55 +0.0
1,029,356 - Rru_A0863 0.55 +0.3
1,029,775 + Rru_A0863 0.80 -1.0
1,029,775 + Rru_A0863 0.80 -0.0
1,029,866 + Rru_A0863 0.85 -0.0
1,029,866 + Rru_A0863 0.85 -0.1
1,029,866 + Rru_A0863 0.85 -0.2
1,029,866 + Rru_A0863 0.85 +0.1
1,029,866 + Rru_A0863 0.85 -0.0
1,029,866 + Rru_A0863 0.85 +1.0
1,029,867 - Rru_A0863 0.85 -0.0
1,029,899 + Rru_A0863 0.87 -0.0
1,029,899 + Rru_A0863 0.87 -0.0
1,029,900 - Rru_A0863 0.87 -1.4
1,029,900 - Rru_A0863 0.87 -0.0
1,029,900 - Rru_A0863 0.87 -0.0
1,029,900 - Rru_A0863 0.87 -0.9
1,030,336 - Rru_A0864 0.12 -0.0
1,030,357 - Rru_A0864 0.13 -0.0
1,030,636 + Rru_A0864 0.29 -0.4
1,030,636 + Rru_A0864 0.29 +0.4
1,030,637 - Rru_A0864 0.29 -0.0
1,030,637 - Rru_A0864 0.29 -0.0
1,030,855 - Rru_A0864 0.41 -0.0
1,031,295 + Rru_A0864 0.65 -0.3
1,031,295 + Rru_A0864 0.65 -0.0
1,031,295 + Rru_A0864 0.65 -0.0
1,031,296 - Rru_A0864 0.65 -2.0
1,031,296 - Rru_A0864 0.65 -0.0
1,031,296 - Rru_A0864 0.65 +0.2
1,031,296 - Rru_A0864 0.65 -0.0
1,031,296 - Rru_A0864 0.65 -0.0
1,031,296 - Rru_A0864 0.65 -0.0
1,031,337 + Rru_A0864 0.67 +0.7
1,031,337 + Rru_A0864 0.67 +0.0
1,031,337 + Rru_A0864 0.67 -0.0
1,031,338 - Rru_A0864 0.67 +0.8
1,031,338 - Rru_A0864 0.67 +0.5
1,031,664 + Rru_A0864 0.85 +0.1
1,031,664 + Rru_A0864 0.85 -0.0
1,031,664 + Rru_A0864 0.85 +1.7
1,031,665 - Rru_A0864 0.85 +0.2
1,031,667 + Rru_A0864 0.85 -0.0
1,031,668 - Rru_A0864 0.86 +0.5
1,031,668 - Rru_A0864 0.86 -0.0
1,031,668 - Rru_A0864 0.86 -0.2
1,031,677 + Rru_A0864 0.86 -1.0
1,031,678 - Rru_A0864 0.86 -0.0
1,031,678 - Rru_A0864 0.86 -0.2
1,031,679 + Rru_A0864 0.86 -0.8
1,031,679 + Rru_A0864 0.86 -0.1
1,031,679 + Rru_A0864 0.86 -0.0
1,031,680 - Rru_A0864 0.86 -0.0
1,031,680 - Rru_A0864 0.86 -1.1
1,031,680 - Rru_A0864 0.86 -1.8
1,031,680 - Rru_A0864 0.86 -0.0
1,031,695 + Rru_A0864 0.87 -0.0
1,031,793 + -0.0
1,031,793 + -0.0
1,031,794 - +0.6
1,031,948 + -0.0
1,031,948 + -0.0
1,031,949 - -0.0
1,031,949 - -0.7
1,032,053 - -0.0
1,032,053 - -0.7
1,032,076 + -0.0
1,032,076 + +0.2
1,032,077 - -0.0
1,032,077 - -0.0
1,032,077 - -0.4
1,032,078 + -0.0
1,032,078 + -0.0
1,032,078 + -0.0
1,032,078 + -2.0
1,032,079 - -0.0
1,032,135 + -1.0
1,032,200 - +0.7
1,032,240 - -0.3
1,032,258 + -0.0
1,032,298 + -3.2
1,032,298 + -1.6
1,032,299 - -1.6
1,032,299 - +0.6
1,032,299 - +0.4
1,032,299 - -0.0
1,032,299 - +0.6
1,032,302 + -0.0
1,032,302 + +1.2
1,032,302 + -0.1
1,032,303 - -0.0
1,032,412 + -0.0
1,032,413 - -0.0
1,032,413 - -0.4
1,032,413 - +0.5
1,032,513 + +1.3
1,032,513 + +0.9
1,032,663 + Rru_A0865 0.17 +0.4
1,032,663 + Rru_A0865 0.17 -0.0
1,032,663 + Rru_A0865 0.17 +0.9
1,032,663 + Rru_A0865 0.17 +0.8
1,032,663 + Rru_A0865 0.17 -0.1
1,032,663 + Rru_A0865 0.17 +0.4
1,032,663 + Rru_A0865 0.17 +0.1
1,032,663 + Rru_A0865 0.17 -0.0
1,032,663 + Rru_A0865 0.17 +0.8
1,032,663 + Rru_A0865 0.17 +1.2
1,032,663 + Rru_A0865 0.17 +0.8
1,032,664 - Rru_A0865 0.17 +0.2
1,032,664 - Rru_A0865 0.17 -1.0
1,032,664 - Rru_A0865 0.17 -0.0
1,032,665 + Rru_A0865 0.17 +1.4
1,032,665 + Rru_A0865 0.17 -0.0
1,032,665 + Rru_A0865 0.17 +0.4
1,032,665 + Rru_A0865 0.17 -0.0
1,032,666 - Rru_A0865 0.17 +0.7
1,032,666 - Rru_A0865 0.17 +0.5
1,032,846 + Rru_A0865 0.25 +0.1
1,032,846 + Rru_A0865 0.25 -0.0
1,032,846 + Rru_A0865 0.25 -0.2
1,032,878 + Rru_A0865 0.27 -0.0
1,032,878 + Rru_A0865 0.27 +1.8
1,032,878 + Rru_A0865 0.27 -1.0
1,032,879 - Rru_A0865 0.27 -2.6

Or see this region's nucleotide sequence