Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0833 and Rru_A0834 are separated by 15 nucleotides Rru_A0834 and Rru_A0835 are separated by 177 nucleotides Rru_A0835 and 11438709 overlap by 276 nucleotides 11438709 and 11581072 overlap by 32 nucleotides 11581072 and 11723464 overlap by 32 nucleotides 11723464 and 11438710 are separated by 0 nucleotides 11438710 and 11581073 overlap by 34 nucleotides 11581073 and 11723465 overlap by 34 nucleotides 11723465 and 11438711 are separated by 0 nucleotides 11438711 and 11581074 overlap by 32 nucleotides 11581074 and 11723466 overlap by 32 nucleotides 11723466 and 11438712 are separated by 0 nucleotides 11438712 and 11581075 overlap by 32 nucleotides 11581075 and 11723467 overlap by 32 nucleotides 11723467 and 11438713 are separated by 0 nucleotides 11438713 and 11581076 overlap by 32 nucleotides 11581076 and 11723468 overlap by 32 nucleotides 11723468 and 11438714 are separated by 0 nucleotides 11438714 and 11581077 overlap by 34 nucleotides 11581077 and 11723469 overlap by 34 nucleotides 11723469 and 11438715 are separated by 0 nucleotides 11438715 and 11581078 overlap by 32 nucleotides 11581078 and 11723470 overlap by 32 nucleotides 11723470 and 11438716 are separated by 0 nucleotides 11438716 and 11581079 overlap by 34 nucleotides 11581079 and 11723471 overlap by 34 nucleotides 11723471 and 11438717 are separated by 0 nucleotides 11438717 and 11581080 overlap by 32 nucleotides 11581080 and 11723472 overlap by 32 nucleotides 11723472 and 11438718 are separated by 0 nucleotides 11438718 and 11581081 overlap by 35 nucleotides 11581081 and 11723473 overlap by 35 nucleotides 11723473 and 11438719 are separated by 0 nucleotides 11438719 and 11581082 overlap by 32 nucleotides 11581082 and 11723474 overlap by 32 nucleotides 11723474 and 11438720 are separated by 0 nucleotides 11438720 and 11581083 overlap by 35 nucleotides 11581083 and 11723475 overlap by 35 nucleotides 11723475 and 11438721 are separated by 0 nucleotides 11438721 and 11581084 overlap by 32 nucleotides 11581084 and 11723476 overlap by 32 nucleotides 11723476 and 11438722 are separated by 0 nucleotides 11438722 and 11581085 overlap by 34 nucleotides 11581085 and 11723477 overlap by 34 nucleotides 11723477 and 11438723 are separated by 0 nucleotides 11438723 and 11581086 overlap by 32 nucleotides 11581086 and 11723478 overlap by 32 nucleotides 11723478 and 11438724 are separated by 0 nucleotides 11438724 and 11581087 overlap by 33 nucleotides 11581087 and 11723479 overlap by 33 nucleotides 11723479 and 11438725 are separated by 0 nucleotides 11438725 and 11581088 overlap by 32 nucleotides 11581088 and 11723480 overlap by 32 nucleotides 11723480 and 11438726 are separated by 0 nucleotides 11438726 and 11581089 overlap by 35 nucleotides 11581089 and 11723481 overlap by 35 nucleotides 11723481 and 11438727 are separated by 0 nucleotides 11438727 and 11581090 overlap by 32 nucleotides 11581090 and 11723482 overlap by 32 nucleotides 11723482 and 11438728 are separated by 0 nucleotides 11438728 and 11581091 overlap by 32 nucleotides 11581091 and 11723483 overlap by 32 nucleotides 11723483 and 11438729 are separated by 0 nucleotides 11438729 and 11581092 overlap by 32 nucleotides 11581092 and 11723484 overlap by 32 nucleotides 11723484 and 11438730 are separated by 0 nucleotides 11438730 and 11581093 overlap by 33 nucleotides 11581093 and 11723485 overlap by 33 nucleotides 11723485 and 11438731 are separated by 0 nucleotides 11438731 and 11581094 overlap by 32 nucleotides 11581094 and 11723486 overlap by 32 nucleotides 11723486 and 11438732 are separated by 0 nucleotides 11438732 and 11581095 overlap by 35 nucleotides 11581095 and 11723487 overlap by 35 nucleotides 11723487 and 11438733 are separated by 0 nucleotides
Rru_A0833: Rru_A0833 - Protein of unknown function DUF48 (NCBI), at 987,840 to 988,874
_A0833
Rru_A0834: Rru_A0834 - Protein of unknown function DUF196 (NCBI), at 988,890 to 989,177
_A0834
Rru_A0835: Rru_A0835 - hypothetical protein (NCBI), at 989,355 to 989,657
_A0835
11438709 - no description, at 989,382 to 989,413
11438709
11581072 - no description, at 989,382 to 989,413
11581072
11723464 - no description, at 989,382 to 989,413
11723464
11438710 - no description, at 989,414 to 989,447
11438710
11581073 - no description, at 989,414 to 989,447
11581073
11723465 - no description, at 989,414 to 989,447
11723465
11438711 - no description, at 989,448 to 989,479
11438711
11581074 - no description, at 989,448 to 989,479
11581074
11723466 - no description, at 989,448 to 989,479
11723466
11438712 - no description, at 989,480 to 989,511
11438712
11581075 - no description, at 989,480 to 989,511
11581075
11723467 - no description, at 989,480 to 989,511
11723467
11438713 - no description, at 989,512 to 989,543
11438713
11581076 - no description, at 989,512 to 989,543
11581076
11723468 - no description, at 989,512 to 989,543
11723468
11438714 - no description, at 989,544 to 989,577
11438714
11581077 - no description, at 989,544 to 989,577
11581077
11723469 - no description, at 989,544 to 989,577
11723469
11438715 - no description, at 989,578 to 989,609
11438715
11581078 - no description, at 989,578 to 989,609
11581078
11723470 - no description, at 989,578 to 989,609
11723470
11438716 - no description, at 989,610 to 989,643
11438716
11581079 - no description, at 989,610 to 989,643
11581079
11723471 - no description, at 989,610 to 989,643
11723471
11438717 - no description, at 989,644 to 989,675
11438717
11581080 - no description, at 989,644 to 989,675
11581080
11723472 - no description, at 989,644 to 989,675
11723472
11438718 - no description, at 989,676 to 989,710
11438718
11581081 - no description, at 989,676 to 989,710
11581081
11723473 - no description, at 989,676 to 989,710
11723473
11438719 - no description, at 989,711 to 989,742
11438719
11581082 - no description, at 989,711 to 989,742
11581082
11723474 - no description, at 989,711 to 989,742
11723474
11438720 - no description, at 989,743 to 989,777
11438720
11581083 - no description, at 989,743 to 989,777
11581083
11723475 - no description, at 989,743 to 989,777
11723475
11438721 - no description, at 989,778 to 989,809
11438721
11581084 - no description, at 989,778 to 989,809
11581084
11723476 - no description, at 989,778 to 989,809
11723476
11438722 - no description, at 989,810 to 989,843
11438722
11581085 - no description, at 989,810 to 989,843
11581085
11723477 - no description, at 989,810 to 989,843
11723477
11438723 - no description, at 989,844 to 989,875
11438723
11581086 - no description, at 989,844 to 989,875
11581086
11723478 - no description, at 989,844 to 989,875
11723478
11438724 - no description, at 989,876 to 989,908
11438724
11581087 - no description, at 989,876 to 989,908
11581087
11723479 - no description, at 989,876 to 989,908
11723479
11438725 - no description, at 989,909 to 989,940
11438725
11581088 - no description, at 989,909 to 989,940
11581088
11723480 - no description, at 989,909 to 989,940
11723480
11438726 - no description, at 989,941 to 989,975
11438726
11581089 - no description, at 989,941 to 989,975
11581089
11723481 - no description, at 989,941 to 989,975
11723481
11438727 - no description, at 989,976 to 990,007
11438727
11581090 - no description, at 989,976 to 990,007
11581090
11723482 - no description, at 989,976 to 990,007
11723482
11438728 - no description, at 990,008 to 990,039
11438728
11581091 - no description, at 990,008 to 990,039
11581091
11723483 - no description, at 990,008 to 990,039
11723483
11438729 - no description, at 990,040 to 990,071
11438729
11581092 - no description, at 990,040 to 990,071
11581092
11723484 - no description, at 990,040 to 990,071
11723484
11438730 - no description, at 990,072 to 990,104
11438730
11581093 - no description, at 990,072 to 990,104
11581093
11723485 - no description, at 990,072 to 990,104
11723485
11438731 - no description, at 990,105 to 990,136
11438731
11581094 - no description, at 990,105 to 990,136
11581094
11723486 - no description, at 990,105 to 990,136
11723486
11438732 - no description, at 990,137 to 990,171
11438732
11581095 - no description, at 990,137 to 990,171
11581095
11723487 - no description, at 990,137 to 990,171
11723487
11438733 - no description, at 990,172 to 990,203
11438733
11581096 - no description, at 990,172 to 990,203
11581096
11723488 - no description, at 990,172 to 990,203
11723488
Position (kb) 988
989
990 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 987.956 kb on + strand, within Rru_A0833 at 987.956 kb on + strand, within Rru_A0833 at 987.957 kb on - strand, within Rru_A0833 at 987.957 kb on - strand, within Rru_A0833 at 987.957 kb on - strand, within Rru_A0833 at 987.957 kb on - strand, within Rru_A0833 at 987.957 kb on - strand, within Rru_A0833 at 987.990 kb on + strand, within Rru_A0833 at 987.990 kb on + strand, within Rru_A0833 at 987.991 kb on - strand, within Rru_A0833 at 987.991 kb on - strand, within Rru_A0833 at 987.991 kb on - strand, within Rru_A0833 at 988.122 kb on + strand, within Rru_A0833 at 988.122 kb on + strand, within Rru_A0833 at 988.123 kb on - strand, within Rru_A0833 at 988.283 kb on + strand, within Rru_A0833 at 988.359 kb on + strand, within Rru_A0833 at 988.360 kb on - strand, within Rru_A0833 at 988.468 kb on + strand, within Rru_A0833 at 988.468 kb on + strand, within Rru_A0833 at 988.469 kb on - strand, within Rru_A0833 at 988.469 kb on - strand, within Rru_A0833 at 988.470 kb on + strand, within Rru_A0833 at 988.470 kb on + strand, within Rru_A0833 at 988.471 kb on - strand, within Rru_A0833 at 988.471 kb on - strand, within Rru_A0833 at 988.473 kb on - strand, within Rru_A0833 at 988.720 kb on + strand, within Rru_A0833 at 988.720 kb on + strand, within Rru_A0833 at 988.720 kb on + strand, within Rru_A0833 at 988.721 kb on - strand, within Rru_A0833 at 988.872 kb on + strand at 988.872 kb on + strand at 988.872 kb on + strand at 988.872 kb on + strand at 988.872 kb on + strand at 988.873 kb on - strand at 988.873 kb on - strand at 988.873 kb on - strand at 988.905 kb on + strand at 988.906 kb on - strand at 988.906 kb on - strand at 988.906 kb on - strand at 988.906 kb on - strand at 988.906 kb on - strand at 988.906 kb on - strand at 989.078 kb on + strand, within Rru_A0834 at 989.089 kb on - strand, within Rru_A0834 at 989.091 kb on + strand, within Rru_A0834 at 989.092 kb on - strand, within Rru_A0834 at 989.257 kb on + strand at 989.271 kb on - strand at 989.364 kb on + strand at 989.364 kb on + strand at 989.364 kb on + strand at 989.364 kb on + strand at 989.365 kb on - strand at 989.365 kb on - strand at 989.365 kb on - strand at 989.365 kb on - strand at 989.365 kb on - strand at 989.418 kb on - strand at 989.418 kb on - strand at 989.418 kb on - strand at 989.418 kb on - strand at 989.421 kb on + strand at 989.421 kb on + strand at 989.421 kb on + strand at 989.422 kb on - strand at 989.422 kb on - strand at 989.432 kb on + strand at 989.433 kb on - strand at 989.441 kb on + strand at 989.442 kb on - strand at 989.442 kb on - strand at 989.442 kb on - strand at 989.745 kb on + strand at 989.745 kb on + strand at 989.745 kb on + strand at 989.816 kb on + strand at 989.942 kb on + strand at 989.942 kb on + strand at 989.942 kb on + strand at 989.942 kb on + strand at 989.942 kb on + strand at 989.942 kb on + strand at 989.942 kb on + strand at 989.942 kb on + strand at 989.942 kb on + strand at 989.942 kb on + strand at 989.942 kb on + strand at 989.943 kb on - strand at 989.943 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 987,956 + Rru_A0833 0.11 -1.0 987,956 + Rru_A0833 0.11 +0.2 987,957 - Rru_A0833 0.11 -0.0 987,957 - Rru_A0833 0.11 +0.4 987,957 - Rru_A0833 0.11 -0.4 987,957 - Rru_A0833 0.11 -0.6 987,957 - Rru_A0833 0.11 +0.4 987,990 + Rru_A0833 0.14 -0.2 987,990 + Rru_A0833 0.14 +1.1 987,991 - Rru_A0833 0.15 -0.0 987,991 - Rru_A0833 0.15 -0.0 987,991 - Rru_A0833 0.15 +0.4 988,122 + Rru_A0833 0.27 +0.4 988,122 + Rru_A0833 0.27 +0.3 988,123 - Rru_A0833 0.27 -1.0 988,283 + Rru_A0833 0.43 +0.2 988,359 + Rru_A0833 0.50 -0.5 988,360 - Rru_A0833 0.50 +0.6 988,468 + Rru_A0833 0.61 -0.5 988,468 + Rru_A0833 0.61 +0.4 988,469 - Rru_A0833 0.61 +0.8 988,469 - Rru_A0833 0.61 -0.0 988,470 + Rru_A0833 0.61 -0.0 988,470 + Rru_A0833 0.61 +0.1 988,471 - Rru_A0833 0.61 +0.9 988,471 - Rru_A0833 0.61 -0.0 988,473 - Rru_A0833 0.61 -0.0 988,720 + Rru_A0833 0.85 +0.8 988,720 + Rru_A0833 0.85 +1.6 988,720 + Rru_A0833 0.85 +0.9 988,721 - Rru_A0833 0.85 -0.0 988,872 + +0.3 988,872 + -0.0 988,872 + +0.5 988,872 + -0.0 988,872 + -0.0 988,873 - -0.0 988,873 - +0.5 988,873 - +0.4 988,905 + +1.3 988,906 - -0.0 988,906 - -0.0 988,906 - -0.0 988,906 - +0.2 988,906 - +0.7 988,906 - +0.3 989,078 + Rru_A0834 0.65 +0.1 989,089 - Rru_A0834 0.69 +0.1 989,091 + Rru_A0834 0.70 -0.0 989,092 - Rru_A0834 0.70 -3.2 989,257 + -1.0 989,271 - -1.0 989,364 + -0.0 989,364 + +1.7 989,364 + -0.0 989,364 + +0.6 989,365 - +0.4 989,365 - +0.4 989,365 - -0.4 989,365 - -0.0 989,365 - -0.2 989,418 - -0.0 989,418 - -0.0 989,418 - +0.1 989,418 - -1.0 989,421 + +0.4 989,421 + +0.5 989,421 + -1.0 989,422 - -0.1 989,422 - -0.0 989,432 + +0.7 989,433 - +0.3 989,441 + +0.4 989,442 - -0.0 989,442 - +0.4 989,442 - -1.0 989,745 + +1.1 989,745 + +1.3 989,745 + +1.4 989,816 + -0.0 989,942 + +1.0 989,942 + +0.4 989,942 + +0.5 989,942 + -0.0 989,942 + +1.3 989,942 + +0.6 989,942 + -0.0 989,942 + -0.0 989,942 + +0.3 989,942 + +0.8 989,942 + +0.9 989,943 - +1.0 989,943 - +0.5
Or see this region's nucleotide sequence