Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0828

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0825 and Rru_A0826 are separated by 73 nucleotidesRru_A0826 and Rru_A0827 are separated by 4 nucleotidesRru_A0827 and Rru_A0828 are separated by 248 nucleotidesRru_A0828 and Rru_A0829 are separated by 11 nucleotidesRru_A0829 and Rru_A0830 overlap by 4 nucleotides Rru_A0825: Rru_A0825 - putative transposase (NCBI), at 980,281 to 980,577 _A0825 Rru_A0826: Rru_A0826 - hypothetical protein (NCBI), at 980,651 to 980,821 _A0826 Rru_A0827: Rru_A0827 - hypothetical protein (NCBI), at 980,826 to 981,182 _A0827 Rru_A0828: Rru_A0828 - CRISPR-associated helicase Cas3, core (NCBI), at 981,431 to 983,689 _A0828 Rru_A0829: Rru_A0829 - CRISPR-associated protein, CT1134 (NCBI), at 983,701 to 984,366 _A0829 Rru_A0830: Rru_A0830 - CRISPR-associated protein, CT1133 (NCBI), at 984,363 to 986,186 _A0830 Position (kb) 981 982 983 984Strain fitness (log2 ratio) -2 -1 0 1 2at 980.458 kb on + strand, within Rru_A0825at 980.458 kb on + strand, within Rru_A0825at 980.470 kb on + strand, within Rru_A0825at 980.470 kb on + strand, within Rru_A0825at 980.525 kb on + strand, within Rru_A0825at 980.526 kb on - strand, within Rru_A0825at 980.819 kb on + strandat 980.820 kb on - strandat 980.825 kb on + strandat 980.825 kb on + strandat 980.825 kb on + strandat 980.825 kb on + strandat 980.825 kb on + strandat 980.826 kb on - strandat 980.826 kb on - strandat 980.826 kb on - strandat 980.912 kb on + strand, within Rru_A0827at 980.913 kb on - strand, within Rru_A0827at 980.973 kb on - strand, within Rru_A0827at 980.973 kb on - strand, within Rru_A0827at 980.977 kb on + strand, within Rru_A0827at 980.977 kb on + strand, within Rru_A0827at 980.977 kb on + strand, within Rru_A0827at 980.978 kb on - strand, within Rru_A0827at 980.980 kb on + strand, within Rru_A0827at 980.981 kb on - strand, within Rru_A0827at 981.014 kb on + strand, within Rru_A0827at 981.014 kb on + strand, within Rru_A0827at 981.015 kb on - strand, within Rru_A0827at 981.187 kb on + strandat 981.272 kb on + strandat 981.362 kb on - strandat 981.413 kb on - strandat 981.434 kb on + strandat 981.435 kb on - strandat 981.437 kb on + strandat 981.437 kb on + strandat 981.438 kb on - strandat 981.438 kb on - strandat 981.593 kb on + strandat 981.594 kb on - strandat 981.594 kb on - strandat 981.661 kb on + strand, within Rru_A0828at 981.661 kb on + strand, within Rru_A0828at 981.661 kb on + strand, within Rru_A0828at 981.662 kb on - strand, within Rru_A0828at 981.662 kb on - strand, within Rru_A0828at 981.662 kb on - strand, within Rru_A0828at 981.664 kb on + strand, within Rru_A0828at 981.664 kb on + strand, within Rru_A0828at 981.664 kb on + strand, within Rru_A0828at 981.665 kb on - strand, within Rru_A0828at 981.665 kb on - strand, within Rru_A0828at 981.665 kb on - strand, within Rru_A0828at 981.665 kb on - strand, within Rru_A0828at 981.731 kb on + strand, within Rru_A0828at 981.731 kb on + strand, within Rru_A0828at 981.731 kb on + strand, within Rru_A0828at 981.731 kb on + strand, within Rru_A0828at 981.731 kb on + strand, within Rru_A0828at 981.731 kb on + strand, within Rru_A0828at 981.732 kb on - strand, within Rru_A0828at 981.732 kb on - strand, within Rru_A0828at 981.732 kb on - strand, within Rru_A0828at 981.732 kb on - strand, within Rru_A0828at 981.732 kb on - strand, within Rru_A0828at 981.732 kb on - strand, within Rru_A0828at 981.801 kb on + strand, within Rru_A0828at 981.802 kb on - strand, within Rru_A0828at 981.884 kb on - strand, within Rru_A0828at 981.974 kb on + strand, within Rru_A0828at 981.974 kb on + strand, within Rru_A0828at 981.974 kb on + strand, within Rru_A0828at 981.974 kb on + strand, within Rru_A0828at 981.975 kb on - strand, within Rru_A0828at 982.063 kb on + strand, within Rru_A0828at 982.064 kb on - strand, within Rru_A0828at 982.064 kb on - strand, within Rru_A0828at 982.064 kb on - strand, within Rru_A0828at 982.064 kb on - strand, within Rru_A0828at 982.175 kb on - strand, within Rru_A0828at 982.202 kb on - strand, within Rru_A0828at 982.283 kb on - strand, within Rru_A0828at 982.409 kb on - strand, within Rru_A0828at 982.619 kb on + strand, within Rru_A0828at 982.619 kb on + strand, within Rru_A0828at 982.619 kb on + strand, within Rru_A0828at 982.620 kb on - strand, within Rru_A0828at 982.620 kb on - strand, within Rru_A0828at 982.620 kb on - strand, within Rru_A0828at 982.642 kb on + strand, within Rru_A0828at 982.642 kb on + strand, within Rru_A0828at 982.643 kb on - strand, within Rru_A0828at 982.806 kb on + strand, within Rru_A0828at 982.836 kb on + strand, within Rru_A0828at 982.849 kb on + strand, within Rru_A0828at 982.850 kb on - strand, within Rru_A0828at 982.931 kb on + strand, within Rru_A0828at 982.932 kb on - strand, within Rru_A0828at 982.932 kb on - strand, within Rru_A0828at 982.932 kb on - strand, within Rru_A0828at 983.167 kb on + strand, within Rru_A0828at 983.167 kb on + strand, within Rru_A0828at 983.168 kb on - strand, within Rru_A0828at 983.205 kb on - strand, within Rru_A0828at 983.262 kb on - strand, within Rru_A0828at 983.276 kb on + strand, within Rru_A0828at 983.277 kb on - strand, within Rru_A0828at 983.277 kb on - strand, within Rru_A0828at 983.357 kb on + strand, within Rru_A0828at 983.357 kb on + strand, within Rru_A0828at 983.357 kb on + strand, within Rru_A0828at 983.357 kb on + strand, within Rru_A0828at 983.357 kb on + strand, within Rru_A0828at 983.687 kb on + strandat 983.688 kb on - strandat 983.782 kb on + strand, within Rru_A0829at 983.782 kb on + strand, within Rru_A0829at 983.782 kb on + strand, within Rru_A0829at 983.782 kb on + strand, within Rru_A0829at 983.782 kb on + strand, within Rru_A0829at 983.783 kb on - strand, within Rru_A0829at 984.040 kb on + strand, within Rru_A0829at 984.040 kb on + strand, within Rru_A0829at 984.040 kb on + strand, within Rru_A0829at 984.041 kb on - strand, within Rru_A0829at 984.041 kb on - strand, within Rru_A0829at 984.090 kb on + strand, within Rru_A0829at 984.090 kb on + strand, within Rru_A0829at 984.112 kb on - strand, within Rru_A0829at 984.112 kb on - strand, within Rru_A0829at 984.393 kb on + strandat 984.393 kb on + strandat 984.394 kb on - strandat 984.449 kb on + strandat 984.450 kb on - strandat 984.451 kb on + strandat 984.535 kb on + strandat 984.615 kb on + strand, within Rru_A0830at 984.615 kb on + strand, within Rru_A0830at 984.615 kb on + strand, within Rru_A0830at 984.615 kb on + strand, within Rru_A0830at 984.615 kb on + strand, within Rru_A0830at 984.615 kb on + strand, within Rru_A0830at 984.615 kb on + strand, within Rru_A0830at 984.615 kb on + strand, within Rru_A0830at 984.615 kb on + strand, within Rru_A0830at 984.616 kb on - strand, within Rru_A0830at 984.616 kb on - strand, within Rru_A0830at 984.616 kb on - strand, within Rru_A0830at 984.616 kb on - strand, within Rru_A0830at 984.616 kb on - strand, within Rru_A0830

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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980,458 + Rru_A0825 0.60 -0.0
980,458 + Rru_A0825 0.60 -0.0
980,470 + Rru_A0825 0.64 -0.0
980,470 + Rru_A0825 0.64 -0.0
980,525 + Rru_A0825 0.82 +0.7
980,526 - Rru_A0825 0.82 +0.5
980,819 + +0.1
980,820 - +0.4
980,825 + -0.0
980,825 + -0.1
980,825 + -0.0
980,825 + +0.1
980,825 + -0.3
980,826 - -0.0
980,826 - -0.0
980,826 - -0.0
980,912 + Rru_A0827 0.24 -0.0
980,913 - Rru_A0827 0.24 +0.2
980,973 - Rru_A0827 0.41 +1.0
980,973 - Rru_A0827 0.41 +0.2
980,977 + Rru_A0827 0.42 -0.0
980,977 + Rru_A0827 0.42 -0.7
980,977 + Rru_A0827 0.42 -0.0
980,978 - Rru_A0827 0.43 -0.0
980,980 + Rru_A0827 0.43 -0.3
980,981 - Rru_A0827 0.43 -0.2
981,014 + Rru_A0827 0.53 +0.6
981,014 + Rru_A0827 0.53 -0.5
981,015 - Rru_A0827 0.53 -0.0
981,187 + -0.8
981,272 + -0.4
981,362 - +0.4
981,413 - +0.1
981,434 + -1.2
981,435 - +0.5
981,437 + -0.2
981,437 + -0.0
981,438 - -0.0
981,438 - -1.2
981,593 + +0.1
981,594 - -1.0
981,594 - -0.0
981,661 + Rru_A0828 0.10 -0.0
981,661 + Rru_A0828 0.10 -0.0
981,661 + Rru_A0828 0.10 -0.1
981,662 - Rru_A0828 0.10 -0.0
981,662 - Rru_A0828 0.10 +0.8
981,662 - Rru_A0828 0.10 -0.2
981,664 + Rru_A0828 0.10 -0.0
981,664 + Rru_A0828 0.10 -1.0
981,664 + Rru_A0828 0.10 +0.5
981,665 - Rru_A0828 0.10 -0.0
981,665 - Rru_A0828 0.10 +0.1
981,665 - Rru_A0828 0.10 -0.0
981,665 - Rru_A0828 0.10 -0.0
981,731 + Rru_A0828 0.13 -1.6
981,731 + Rru_A0828 0.13 +0.3
981,731 + Rru_A0828 0.13 +0.2
981,731 + Rru_A0828 0.13 +0.3
981,731 + Rru_A0828 0.13 +0.8
981,731 + Rru_A0828 0.13 +0.0
981,732 - Rru_A0828 0.13 +0.1
981,732 - Rru_A0828 0.13 -1.8
981,732 - Rru_A0828 0.13 -0.0
981,732 - Rru_A0828 0.13 +0.8
981,732 - Rru_A0828 0.13 -0.0
981,732 - Rru_A0828 0.13 -0.0
981,801 + Rru_A0828 0.16 +0.7
981,802 - Rru_A0828 0.16 -0.0
981,884 - Rru_A0828 0.20 +0.7
981,974 + Rru_A0828 0.24 -0.0
981,974 + Rru_A0828 0.24 +0.6
981,974 + Rru_A0828 0.24 -1.0
981,974 + Rru_A0828 0.24 -0.0
981,975 - Rru_A0828 0.24 +0.2
982,063 + Rru_A0828 0.28 -0.4
982,064 - Rru_A0828 0.28 -0.0
982,064 - Rru_A0828 0.28 -0.0
982,064 - Rru_A0828 0.28 +0.3
982,064 - Rru_A0828 0.28 +1.6
982,175 - Rru_A0828 0.33 -0.0
982,202 - Rru_A0828 0.34 +0.5
982,283 - Rru_A0828 0.38 +0.5
982,409 - Rru_A0828 0.43 +0.7
982,619 + Rru_A0828 0.53 +0.9
982,619 + Rru_A0828 0.53 +0.1
982,619 + Rru_A0828 0.53 -0.5
982,620 - Rru_A0828 0.53 -0.0
982,620 - Rru_A0828 0.53 -0.0
982,620 - Rru_A0828 0.53 +0.8
982,642 + Rru_A0828 0.54 +0.0
982,642 + Rru_A0828 0.54 -0.0
982,643 - Rru_A0828 0.54 +0.9
982,806 + Rru_A0828 0.61 -0.0
982,836 + Rru_A0828 0.62 -0.0
982,849 + Rru_A0828 0.63 -0.0
982,850 - Rru_A0828 0.63 +0.6
982,931 + Rru_A0828 0.66 +0.1
982,932 - Rru_A0828 0.66 -0.1
982,932 - Rru_A0828 0.66 -0.0
982,932 - Rru_A0828 0.66 +1.2
983,167 + Rru_A0828 0.77 +0.3
983,167 + Rru_A0828 0.77 -0.0
983,168 - Rru_A0828 0.77 +0.6
983,205 - Rru_A0828 0.79 +2.0
983,262 - Rru_A0828 0.81 -0.3
983,276 + Rru_A0828 0.82 +0.2
983,277 - Rru_A0828 0.82 -0.0
983,277 - Rru_A0828 0.82 -1.0
983,357 + Rru_A0828 0.85 -0.0
983,357 + Rru_A0828 0.85 -1.2
983,357 + Rru_A0828 0.85 -0.2
983,357 + Rru_A0828 0.85 -0.0
983,357 + Rru_A0828 0.85 -0.0
983,687 + -0.0
983,688 - +0.1
983,782 + Rru_A0829 0.12 -0.5
983,782 + Rru_A0829 0.12 +1.1
983,782 + Rru_A0829 0.12 +0.6
983,782 + Rru_A0829 0.12 -0.0
983,782 + Rru_A0829 0.12 -0.0
983,783 - Rru_A0829 0.12 -0.0
984,040 + Rru_A0829 0.51 -0.0
984,040 + Rru_A0829 0.51 +1.5
984,040 + Rru_A0829 0.51 +1.0
984,041 - Rru_A0829 0.51 -0.0
984,041 - Rru_A0829 0.51 -0.2
984,090 + Rru_A0829 0.58 -0.0
984,090 + Rru_A0829 0.58 -0.1
984,112 - Rru_A0829 0.62 -0.0
984,112 - Rru_A0829 0.62 -0.0
984,393 + +0.7
984,393 + -0.0
984,394 - -0.0
984,449 + -0.2
984,450 - +1.6
984,451 + -0.2
984,535 + +0.2
984,615 + Rru_A0830 0.14 +0.4
984,615 + Rru_A0830 0.14 +2.0
984,615 + Rru_A0830 0.14 -0.0
984,615 + Rru_A0830 0.14 +0.3
984,615 + Rru_A0830 0.14 -0.0
984,615 + Rru_A0830 0.14 -1.0
984,615 + Rru_A0830 0.14 -0.0
984,615 + Rru_A0830 0.14 -0.0
984,615 + Rru_A0830 0.14 -0.9
984,616 - Rru_A0830 0.14 -0.2
984,616 - Rru_A0830 0.14 -0.0
984,616 - Rru_A0830 0.14 -0.0
984,616 - Rru_A0830 0.14 -0.0
984,616 - Rru_A0830 0.14 -0.5

Or see this region's nucleotide sequence