Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0827

Experiment: acetate; Light intensity 9 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0824 and Rru_A0825 are separated by 214 nucleotidesRru_A0825 and Rru_A0826 are separated by 73 nucleotidesRru_A0826 and Rru_A0827 are separated by 4 nucleotidesRru_A0827 and Rru_A0828 are separated by 248 nucleotides Rru_A0824: Rru_A0824 - no description, at 979,872 to 980,066 _A0824 Rru_A0825: Rru_A0825 - putative transposase (NCBI), at 980,281 to 980,577 _A0825 Rru_A0826: Rru_A0826 - hypothetical protein (NCBI), at 980,651 to 980,821 _A0826 Rru_A0827: Rru_A0827 - hypothetical protein (NCBI), at 980,826 to 981,182 _A0827 Rru_A0828: Rru_A0828 - CRISPR-associated helicase Cas3, core (NCBI), at 981,431 to 983,689 _A0828 Position (kb) 980 981 982Strain fitness (log2 ratio) -2 -1 0 1at 979.873 kb on + strandat 979.990 kb on + strand, within Rru_A0824at 979.990 kb on + strand, within Rru_A0824at 979.991 kb on - strand, within Rru_A0824at 979.991 kb on - strand, within Rru_A0824at 980.087 kb on + strandat 980.087 kb on + strandat 980.089 kb on + strandat 980.178 kb on - strandat 980.178 kb on - strandat 980.178 kb on - strandat 980.178 kb on - strandat 980.178 kb on - strandat 980.200 kb on + strandat 980.212 kb on + strandat 980.458 kb on + strand, within Rru_A0825at 980.458 kb on + strand, within Rru_A0825at 980.470 kb on + strand, within Rru_A0825at 980.470 kb on + strand, within Rru_A0825at 980.525 kb on + strand, within Rru_A0825at 980.526 kb on - strand, within Rru_A0825at 980.819 kb on + strandat 980.820 kb on - strandat 980.825 kb on + strandat 980.825 kb on + strandat 980.825 kb on + strandat 980.825 kb on + strandat 980.825 kb on + strandat 980.826 kb on - strandat 980.826 kb on - strandat 980.826 kb on - strandat 980.912 kb on + strand, within Rru_A0827at 980.913 kb on - strand, within Rru_A0827at 980.973 kb on - strand, within Rru_A0827at 980.973 kb on - strand, within Rru_A0827at 980.977 kb on + strand, within Rru_A0827at 980.977 kb on + strand, within Rru_A0827at 980.977 kb on + strand, within Rru_A0827at 980.978 kb on - strand, within Rru_A0827at 980.980 kb on + strand, within Rru_A0827at 980.981 kb on - strand, within Rru_A0827at 981.014 kb on + strand, within Rru_A0827at 981.014 kb on + strand, within Rru_A0827at 981.015 kb on - strand, within Rru_A0827at 981.187 kb on + strandat 981.272 kb on + strandat 981.362 kb on - strandat 981.413 kb on - strandat 981.434 kb on + strandat 981.435 kb on - strandat 981.437 kb on + strandat 981.437 kb on + strandat 981.438 kb on - strandat 981.438 kb on - strandat 981.593 kb on + strandat 981.594 kb on - strandat 981.594 kb on - strandat 981.661 kb on + strand, within Rru_A0828at 981.661 kb on + strand, within Rru_A0828at 981.661 kb on + strand, within Rru_A0828at 981.662 kb on - strand, within Rru_A0828at 981.662 kb on - strand, within Rru_A0828at 981.662 kb on - strand, within Rru_A0828at 981.664 kb on + strand, within Rru_A0828at 981.664 kb on + strand, within Rru_A0828at 981.664 kb on + strand, within Rru_A0828at 981.665 kb on - strand, within Rru_A0828at 981.665 kb on - strand, within Rru_A0828at 981.665 kb on - strand, within Rru_A0828at 981.665 kb on - strand, within Rru_A0828at 981.731 kb on + strand, within Rru_A0828at 981.731 kb on + strand, within Rru_A0828at 981.731 kb on + strand, within Rru_A0828at 981.731 kb on + strand, within Rru_A0828at 981.731 kb on + strand, within Rru_A0828at 981.731 kb on + strand, within Rru_A0828at 981.732 kb on - strand, within Rru_A0828at 981.732 kb on - strand, within Rru_A0828at 981.732 kb on - strand, within Rru_A0828at 981.732 kb on - strand, within Rru_A0828at 981.732 kb on - strand, within Rru_A0828at 981.732 kb on - strand, within Rru_A0828at 981.801 kb on + strand, within Rru_A0828at 981.802 kb on - strand, within Rru_A0828at 981.884 kb on - strand, within Rru_A0828at 981.974 kb on + strand, within Rru_A0828at 981.974 kb on + strand, within Rru_A0828at 981.974 kb on + strand, within Rru_A0828at 981.974 kb on + strand, within Rru_A0828at 981.975 kb on - strand, within Rru_A0828at 982.063 kb on + strand, within Rru_A0828at 982.064 kb on - strand, within Rru_A0828at 982.064 kb on - strand, within Rru_A0828at 982.064 kb on - strand, within Rru_A0828at 982.064 kb on - strand, within Rru_A0828at 982.175 kb on - strand, within Rru_A0828

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
remove
979,873 + +0.6
979,990 + Rru_A0824 0.61 -0.3
979,990 + Rru_A0824 0.61 +0.3
979,991 - Rru_A0824 0.61 +0.5
979,991 - Rru_A0824 0.61 +0.4
980,087 + +0.4
980,087 + -2.0
980,089 + -0.0
980,178 - -1.0
980,178 - -0.0
980,178 - -0.0
980,178 - +0.1
980,178 - -0.0
980,200 + +0.0
980,212 + -0.0
980,458 + Rru_A0825 0.60 -0.0
980,458 + Rru_A0825 0.60 -0.0
980,470 + Rru_A0825 0.64 -0.0
980,470 + Rru_A0825 0.64 -0.0
980,525 + Rru_A0825 0.82 +0.7
980,526 - Rru_A0825 0.82 +0.5
980,819 + +0.1
980,820 - +0.4
980,825 + -0.0
980,825 + -0.1
980,825 + -0.0
980,825 + +0.1
980,825 + -0.3
980,826 - -0.0
980,826 - -0.0
980,826 - -0.0
980,912 + Rru_A0827 0.24 -0.0
980,913 - Rru_A0827 0.24 +0.2
980,973 - Rru_A0827 0.41 +1.0
980,973 - Rru_A0827 0.41 +0.2
980,977 + Rru_A0827 0.42 -0.0
980,977 + Rru_A0827 0.42 -0.7
980,977 + Rru_A0827 0.42 -0.0
980,978 - Rru_A0827 0.43 -0.0
980,980 + Rru_A0827 0.43 -0.3
980,981 - Rru_A0827 0.43 -0.2
981,014 + Rru_A0827 0.53 +0.6
981,014 + Rru_A0827 0.53 -0.5
981,015 - Rru_A0827 0.53 -0.0
981,187 + -0.8
981,272 + -0.4
981,362 - +0.4
981,413 - +0.1
981,434 + -1.2
981,435 - +0.5
981,437 + -0.2
981,437 + -0.0
981,438 - -0.0
981,438 - -1.2
981,593 + +0.1
981,594 - -1.0
981,594 - -0.0
981,661 + Rru_A0828 0.10 -0.0
981,661 + Rru_A0828 0.10 -0.0
981,661 + Rru_A0828 0.10 -0.1
981,662 - Rru_A0828 0.10 -0.0
981,662 - Rru_A0828 0.10 +0.8
981,662 - Rru_A0828 0.10 -0.2
981,664 + Rru_A0828 0.10 -0.0
981,664 + Rru_A0828 0.10 -1.0
981,664 + Rru_A0828 0.10 +0.5
981,665 - Rru_A0828 0.10 -0.0
981,665 - Rru_A0828 0.10 +0.1
981,665 - Rru_A0828 0.10 -0.0
981,665 - Rru_A0828 0.10 -0.0
981,731 + Rru_A0828 0.13 -1.6
981,731 + Rru_A0828 0.13 +0.3
981,731 + Rru_A0828 0.13 +0.2
981,731 + Rru_A0828 0.13 +0.3
981,731 + Rru_A0828 0.13 +0.8
981,731 + Rru_A0828 0.13 +0.0
981,732 - Rru_A0828 0.13 +0.1
981,732 - Rru_A0828 0.13 -1.8
981,732 - Rru_A0828 0.13 -0.0
981,732 - Rru_A0828 0.13 +0.8
981,732 - Rru_A0828 0.13 -0.0
981,732 - Rru_A0828 0.13 -0.0
981,801 + Rru_A0828 0.16 +0.7
981,802 - Rru_A0828 0.16 -0.0
981,884 - Rru_A0828 0.20 +0.7
981,974 + Rru_A0828 0.24 -0.0
981,974 + Rru_A0828 0.24 +0.6
981,974 + Rru_A0828 0.24 -1.0
981,974 + Rru_A0828 0.24 -0.0
981,975 - Rru_A0828 0.24 +0.2
982,063 + Rru_A0828 0.28 -0.4
982,064 - Rru_A0828 0.28 -0.0
982,064 - Rru_A0828 0.28 -0.0
982,064 - Rru_A0828 0.28 +0.3
982,064 - Rru_A0828 0.28 +1.6
982,175 - Rru_A0828 0.33 -0.0

Or see this region's nucleotide sequence