Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0809 and Rru_A0810 are separated by 15 nucleotides Rru_A0810 and Rru_A0811 are separated by 283 nucleotides Rru_A0811 and Rru_A0812 are separated by 7 nucleotides
Rru_A0809: Rru_A0809 - hypothetical protein (NCBI), at 964,687 to 966,627
_A0809
Rru_A0810: Rru_A0810 - hypothetical protein (NCBI), at 966,643 to 966,933
_A0810
Rru_A0811: Rru_A0811 - Helix-turn-helix protein, CopG (NCBI), at 967,217 to 967,687
_A0811
Rru_A0812: Rru_A0812 - no description, at 967,695 to 968,819
_A0812
Position (kb) 966
967 Strain fitness (log2 ratio) -1
0
1 at 965.713 kb on + strand, within Rru_A0809 at 965.713 kb on + strand, within Rru_A0809 at 965.714 kb on - strand, within Rru_A0809 at 965.714 kb on - strand, within Rru_A0809 at 965.739 kb on + strand, within Rru_A0809 at 965.829 kb on - strand, within Rru_A0809 at 965.834 kb on + strand, within Rru_A0809 at 966.204 kb on - strand, within Rru_A0809 at 966.331 kb on - strand, within Rru_A0809 at 966.565 kb on + strand at 966.566 kb on - strand at 966.566 kb on - strand at 966.749 kb on + strand, within Rru_A0810 at 966.749 kb on + strand, within Rru_A0810 at 966.749 kb on + strand, within Rru_A0810 at 966.750 kb on - strand, within Rru_A0810 at 966.750 kb on - strand, within Rru_A0810 at 966.750 kb on - strand, within Rru_A0810 at 966.750 kb on - strand, within Rru_A0810 at 966.750 kb on - strand, within Rru_A0810 at 966.756 kb on + strand, within Rru_A0810 at 966.756 kb on + strand, within Rru_A0810 at 966.831 kb on - strand, within Rru_A0810 at 966.835 kb on - strand, within Rru_A0810 at 966.835 kb on - strand, within Rru_A0810 at 966.835 kb on - strand, within Rru_A0810 at 966.916 kb on + strand at 967.086 kb on + strand at 967.087 kb on - strand at 967.087 kb on - strand at 967.087 kb on - strand at 967.087 kb on - strand at 967.087 kb on - strand at 967.136 kb on + strand at 967.136 kb on + strand at 967.137 kb on - strand at 967.137 kb on - strand at 967.191 kb on + strand at 967.369 kb on - strand, within Rru_A0811 at 967.665 kb on + strand at 967.665 kb on + strand at 967.665 kb on + strand at 967.665 kb on + strand at 967.665 kb on + strand at 967.666 kb on - strand at 967.857 kb on - strand, within Rru_A0812 at 967.932 kb on + strand, within Rru_A0812
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 965,713 + Rru_A0809 0.53 -0.0 965,713 + Rru_A0809 0.53 +0.1 965,714 - Rru_A0809 0.53 -0.0 965,714 - Rru_A0809 0.53 -0.0 965,739 + Rru_A0809 0.54 +1.2 965,829 - Rru_A0809 0.59 -0.0 965,834 + Rru_A0809 0.59 -0.0 966,204 - Rru_A0809 0.78 -0.0 966,331 - Rru_A0809 0.85 -0.2 966,565 + -0.0 966,566 - -0.3 966,566 - +1.1 966,749 + Rru_A0810 0.36 +0.3 966,749 + Rru_A0810 0.36 -1.2 966,749 + Rru_A0810 0.36 -0.0 966,750 - Rru_A0810 0.37 +0.2 966,750 - Rru_A0810 0.37 -0.2 966,750 - Rru_A0810 0.37 -0.0 966,750 - Rru_A0810 0.37 +0.2 966,750 - Rru_A0810 0.37 -0.0 966,756 + Rru_A0810 0.39 +0.4 966,756 + Rru_A0810 0.39 -0.0 966,831 - Rru_A0810 0.65 +0.9 966,835 - Rru_A0810 0.66 -0.0 966,835 - Rru_A0810 0.66 -1.0 966,835 - Rru_A0810 0.66 +0.0 966,916 + -0.0 967,086 + +0.3 967,087 - -1.6 967,087 - -0.0 967,087 - -0.0 967,087 - +0.4 967,087 - +0.5 967,136 + -0.0 967,136 + -1.0 967,137 - -0.0 967,137 - -0.5 967,191 + +0.3 967,369 - Rru_A0811 0.32 -0.0 967,665 + -0.1 967,665 + +0.2 967,665 + +1.0 967,665 + +0.3 967,665 + +0.6 967,666 - -1.0 967,857 - Rru_A0812 0.14 +1.1 967,932 + Rru_A0812 0.21 -0.0
Or see this region's nucleotide sequence