Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0798

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0797 and Rru_A0798 are separated by 4 nucleotidesRru_A0798 and Rru_A0799 are separated by 261 nucleotides Rru_A0797: Rru_A0797 - major facilitator transporter superfamily MFS_1 (NCBI), at 951,704 to 952,939 _A0797 Rru_A0798: Rru_A0798 - 7-keto-8-aminopelargonate synthetase and related enzymes-like (NCBI), at 952,944 to 953,501 _A0798 Rru_A0799: Rru_A0799 - extracellular solute-binding protein, family 5 (NCBI), at 953,763 to 955,358 _A0799 Position (kb) 952 953 954Strain fitness (log2 ratio) -1 0 1 2 3at 951.948 kb on + strand, within Rru_A0797at 951.949 kb on - strand, within Rru_A0797at 951.949 kb on - strand, within Rru_A0797at 951.949 kb on - strand, within Rru_A0797at 951.949 kb on - strand, within Rru_A0797at 951.993 kb on + strand, within Rru_A0797at 951.993 kb on + strand, within Rru_A0797at 951.994 kb on - strand, within Rru_A0797at 951.994 kb on - strand, within Rru_A0797at 951.994 kb on - strand, within Rru_A0797at 951.994 kb on - strand, within Rru_A0797at 951.994 kb on - strand, within Rru_A0797at 951.994 kb on - strand, within Rru_A0797at 951.994 kb on - strand, within Rru_A0797at 951.994 kb on - strand, within Rru_A0797at 952.248 kb on + strand, within Rru_A0797at 952.248 kb on + strand, within Rru_A0797at 952.248 kb on + strand, within Rru_A0797at 952.248 kb on + strand, within Rru_A0797at 952.249 kb on - strand, within Rru_A0797at 952.249 kb on - strand, within Rru_A0797at 952.249 kb on - strand, within Rru_A0797at 952.254 kb on + strand, within Rru_A0797at 952.255 kb on - strand, within Rru_A0797at 952.261 kb on + strand, within Rru_A0797at 952.261 kb on + strand, within Rru_A0797at 952.261 kb on + strand, within Rru_A0797at 952.262 kb on - strand, within Rru_A0797at 952.262 kb on - strand, within Rru_A0797at 952.262 kb on - strand, within Rru_A0797at 952.348 kb on + strand, within Rru_A0797at 952.348 kb on + strand, within Rru_A0797at 952.348 kb on + strand, within Rru_A0797at 952.349 kb on - strand, within Rru_A0797at 952.349 kb on - strand, within Rru_A0797at 952.432 kb on - strand, within Rru_A0797at 952.512 kb on + strand, within Rru_A0797at 952.512 kb on + strand, within Rru_A0797at 952.513 kb on - strand, within Rru_A0797at 952.513 kb on - strand, within Rru_A0797at 952.588 kb on - strand, within Rru_A0797at 952.588 kb on - strand, within Rru_A0797at 952.759 kb on - strand, within Rru_A0797at 952.759 kb on - strand, within Rru_A0797at 952.759 kb on - strand, within Rru_A0797at 953.092 kb on + strand, within Rru_A0798at 953.092 kb on + strand, within Rru_A0798at 953.092 kb on + strand, within Rru_A0798at 953.092 kb on + strand, within Rru_A0798at 953.092 kb on + strand, within Rru_A0798at 953.092 kb on + strand, within Rru_A0798at 953.092 kb on + strand, within Rru_A0798at 953.092 kb on + strand, within Rru_A0798at 953.092 kb on + strand, within Rru_A0798at 953.093 kb on - strand, within Rru_A0798at 953.093 kb on - strand, within Rru_A0798at 953.093 kb on - strand, within Rru_A0798at 953.093 kb on - strand, within Rru_A0798at 953.093 kb on - strand, within Rru_A0798at 953.093 kb on - strand, within Rru_A0798at 953.093 kb on - strand, within Rru_A0798at 953.124 kb on + strand, within Rru_A0798at 953.124 kb on + strand, within Rru_A0798at 953.125 kb on - strand, within Rru_A0798at 953.125 kb on - strand, within Rru_A0798at 953.125 kb on - strand, within Rru_A0798at 953.208 kb on - strand, within Rru_A0798at 953.274 kb on - strand, within Rru_A0798at 953.275 kb on + strand, within Rru_A0798at 953.275 kb on + strand, within Rru_A0798at 953.275 kb on + strand, within Rru_A0798at 953.275 kb on + strand, within Rru_A0798at 953.275 kb on + strand, within Rru_A0798at 953.275 kb on + strand, within Rru_A0798at 953.275 kb on + strand, within Rru_A0798at 953.276 kb on - strand, within Rru_A0798at 953.276 kb on - strand, within Rru_A0798at 953.276 kb on - strand, within Rru_A0798at 953.276 kb on - strand, within Rru_A0798at 953.276 kb on - strand, within Rru_A0798at 953.276 kb on - strand, within Rru_A0798at 953.276 kb on - strand, within Rru_A0798at 953.276 kb on - strand, within Rru_A0798at 953.936 kb on + strand, within Rru_A0799at 953.946 kb on + strand, within Rru_A0799at 954.218 kb on + strand, within Rru_A0799at 954.332 kb on + strand, within Rru_A0799at 954.332 kb on + strand, within Rru_A0799at 954.332 kb on + strand, within Rru_A0799at 954.418 kb on + strand, within Rru_A0799at 954.441 kb on + strand, within Rru_A0799at 954.441 kb on + strand, within Rru_A0799at 954.441 kb on + strand, within Rru_A0799at 954.442 kb on - strand, within Rru_A0799at 954.442 kb on - strand, within Rru_A0799at 954.444 kb on + strand, within Rru_A0799at 954.444 kb on + strand, within Rru_A0799at 954.444 kb on + strand, within Rru_A0799at 954.444 kb on + strand, within Rru_A0799at 954.444 kb on + strand, within Rru_A0799at 954.444 kb on + strand, within Rru_A0799at 954.444 kb on + strand, within Rru_A0799at 954.445 kb on - strand, within Rru_A0799at 954.445 kb on - strand, within Rru_A0799at 954.485 kb on + strand, within Rru_A0799

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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951,948 + Rru_A0797 0.20 +0.5
951,949 - Rru_A0797 0.20 -1.6
951,949 - Rru_A0797 0.20 +0.8
951,949 - Rru_A0797 0.20 +0.7
951,949 - Rru_A0797 0.20 -0.0
951,993 + Rru_A0797 0.23 -0.0
951,993 + Rru_A0797 0.23 +0.2
951,994 - Rru_A0797 0.23 +0.6
951,994 - Rru_A0797 0.23 -0.2
951,994 - Rru_A0797 0.23 +0.2
951,994 - Rru_A0797 0.23 +0.2
951,994 - Rru_A0797 0.23 -0.5
951,994 - Rru_A0797 0.23 -1.6
951,994 - Rru_A0797 0.23 +0.6
951,994 - Rru_A0797 0.23 +0.3
952,248 + Rru_A0797 0.44 +1.2
952,248 + Rru_A0797 0.44 +0.8
952,248 + Rru_A0797 0.44 +1.2
952,248 + Rru_A0797 0.44 -1.6
952,249 - Rru_A0797 0.44 -0.0
952,249 - Rru_A0797 0.44 +1.2
952,249 - Rru_A0797 0.44 -0.0
952,254 + Rru_A0797 0.44 +0.5
952,255 - Rru_A0797 0.45 +0.7
952,261 + Rru_A0797 0.45 -0.0
952,261 + Rru_A0797 0.45 -0.0
952,261 + Rru_A0797 0.45 -0.0
952,262 - Rru_A0797 0.45 +0.5
952,262 - Rru_A0797 0.45 +0.9
952,262 - Rru_A0797 0.45 +0.1
952,348 + Rru_A0797 0.52 +1.9
952,348 + Rru_A0797 0.52 +0.2
952,348 + Rru_A0797 0.52 +3.0
952,349 - Rru_A0797 0.52 +0.2
952,349 - Rru_A0797 0.52 -0.5
952,432 - Rru_A0797 0.59 -0.0
952,512 + Rru_A0797 0.65 +0.7
952,512 + Rru_A0797 0.65 -1.6
952,513 - Rru_A0797 0.65 +0.2
952,513 - Rru_A0797 0.65 +0.6
952,588 - Rru_A0797 0.72 +0.8
952,588 - Rru_A0797 0.72 -0.0
952,759 - Rru_A0797 0.85 +0.5
952,759 - Rru_A0797 0.85 -0.0
952,759 - Rru_A0797 0.85 -0.0
953,092 + Rru_A0798 0.27 -0.2
953,092 + Rru_A0798 0.27 -0.0
953,092 + Rru_A0798 0.27 -0.0
953,092 + Rru_A0798 0.27 -0.0
953,092 + Rru_A0798 0.27 +1.2
953,092 + Rru_A0798 0.27 +0.7
953,092 + Rru_A0798 0.27 +1.7
953,092 + Rru_A0798 0.27 -0.0
953,092 + Rru_A0798 0.27 -0.0
953,093 - Rru_A0798 0.27 +0.6
953,093 - Rru_A0798 0.27 -1.0
953,093 - Rru_A0798 0.27 +0.4
953,093 - Rru_A0798 0.27 -0.0
953,093 - Rru_A0798 0.27 -0.0
953,093 - Rru_A0798 0.27 -0.9
953,093 - Rru_A0798 0.27 +0.3
953,124 + Rru_A0798 0.32 -0.0
953,124 + Rru_A0798 0.32 -0.0
953,125 - Rru_A0798 0.32 -0.1
953,125 - Rru_A0798 0.32 +1.0
953,125 - Rru_A0798 0.32 -0.0
953,208 - Rru_A0798 0.47 -1.4
953,274 - Rru_A0798 0.59 -0.7
953,275 + Rru_A0798 0.59 -0.0
953,275 + Rru_A0798 0.59 -1.0
953,275 + Rru_A0798 0.59 +0.6
953,275 + Rru_A0798 0.59 +0.1
953,275 + Rru_A0798 0.59 +0.8
953,275 + Rru_A0798 0.59 +0.1
953,275 + Rru_A0798 0.59 -0.0
953,276 - Rru_A0798 0.59 -0.0
953,276 - Rru_A0798 0.59 -0.9
953,276 - Rru_A0798 0.59 -0.0
953,276 - Rru_A0798 0.59 -0.0
953,276 - Rru_A0798 0.59 -0.0
953,276 - Rru_A0798 0.59 -0.3
953,276 - Rru_A0798 0.59 -0.2
953,276 - Rru_A0798 0.59 -0.1
953,936 + Rru_A0799 0.11 -0.0
953,946 + Rru_A0799 0.11 +0.3
954,218 + Rru_A0799 0.29 +0.4
954,332 + Rru_A0799 0.36 -0.4
954,332 + Rru_A0799 0.36 -0.0
954,332 + Rru_A0799 0.36 +0.6
954,418 + Rru_A0799 0.41 +1.0
954,441 + Rru_A0799 0.42 -0.9
954,441 + Rru_A0799 0.42 +0.1
954,441 + Rru_A0799 0.42 -0.0
954,442 - Rru_A0799 0.43 +0.3
954,442 - Rru_A0799 0.43 -0.1
954,444 + Rru_A0799 0.43 +0.1
954,444 + Rru_A0799 0.43 -0.0
954,444 + Rru_A0799 0.43 -0.4
954,444 + Rru_A0799 0.43 -0.0
954,444 + Rru_A0799 0.43 +0.4
954,444 + Rru_A0799 0.43 -1.0
954,444 + Rru_A0799 0.43 +0.4
954,445 - Rru_A0799 0.43 +0.2
954,445 - Rru_A0799 0.43 +0.4
954,485 + Rru_A0799 0.45 +2.0

Or see this region's nucleotide sequence