Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0790

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0788 and Rru_A0789 overlap by 32 nucleotidesRru_A0789 and Rru_A0790 are separated by 26 nucleotidesRru_A0790 and Rru_A0791 are separated by 47 nucleotides Rru_A0788: Rru_A0788 - ABC transporter component (NCBI), at 941,109 to 942,164 _A0788 Rru_A0789: Rru_A0789 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 942,133 to 942,810 _A0789 Rru_A0790: Rru_A0790 - Phenylacetate--CoA ligase (NCBI), at 942,837 to 944,213 _A0790 Rru_A0791: Rru_A0791 - NLPA lipoprotein (NCBI), at 944,261 to 945,049 _A0791 Position (kb) 942 943 944 945Strain fitness (log2 ratio) -1 0 1 2at 942.015 kb on + strand, within Rru_A0788at 942.016 kb on - strand, within Rru_A0788at 942.093 kb on + strandat 942.673 kb on + strand, within Rru_A0789at 942.808 kb on + strandat 942.809 kb on - strandat 942.901 kb on - strandat 942.981 kb on + strand, within Rru_A0790at 942.981 kb on + strand, within Rru_A0790at 943.167 kb on + strand, within Rru_A0790at 943.167 kb on + strand, within Rru_A0790at 943.168 kb on - strand, within Rru_A0790at 943.168 kb on - strand, within Rru_A0790at 943.168 kb on - strand, within Rru_A0790at 943.168 kb on - strand, within Rru_A0790at 943.297 kb on - strand, within Rru_A0790at 943.467 kb on + strand, within Rru_A0790at 943.468 kb on - strand, within Rru_A0790at 943.608 kb on + strand, within Rru_A0790at 943.694 kb on + strand, within Rru_A0790at 943.694 kb on + strand, within Rru_A0790at 943.694 kb on + strand, within Rru_A0790at 943.695 kb on - strand, within Rru_A0790at 943.695 kb on - strand, within Rru_A0790at 943.981 kb on - strand, within Rru_A0790at 944.165 kb on + strandat 944.366 kb on + strand, within Rru_A0791at 944.367 kb on - strand, within Rru_A0791at 944.367 kb on - strand, within Rru_A0791at 944.384 kb on + strand, within Rru_A0791at 944.384 kb on + strand, within Rru_A0791at 944.384 kb on + strand, within Rru_A0791at 944.384 kb on + strand, within Rru_A0791at 944.384 kb on + strand, within Rru_A0791at 944.384 kb on + strand, within Rru_A0791at 944.385 kb on - strand, within Rru_A0791at 944.447 kb on + strand, within Rru_A0791at 944.448 kb on - strand, within Rru_A0791at 944.513 kb on + strand, within Rru_A0791at 944.514 kb on - strand, within Rru_A0791at 944.543 kb on + strand, within Rru_A0791at 944.543 kb on + strand, within Rru_A0791at 944.544 kb on - strand, within Rru_A0791at 944.945 kb on - strand, within Rru_A0791at 944.969 kb on + strand, within Rru_A0791at 944.970 kb on - strand, within Rru_A0791

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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942,015 + Rru_A0788 0.86 -0.0
942,016 - Rru_A0788 0.86 +0.7
942,093 + -0.0
942,673 + Rru_A0789 0.80 -0.0
942,808 + -0.0
942,809 - -0.0
942,901 - -0.0
942,981 + Rru_A0790 0.10 +0.4
942,981 + Rru_A0790 0.10 +1.4
943,167 + Rru_A0790 0.24 +2.4
943,167 + Rru_A0790 0.24 -0.0
943,168 - Rru_A0790 0.24 -0.0
943,168 - Rru_A0790 0.24 -0.0
943,168 - Rru_A0790 0.24 +0.2
943,168 - Rru_A0790 0.24 +0.3
943,297 - Rru_A0790 0.33 -0.0
943,467 + Rru_A0790 0.46 +1.1
943,468 - Rru_A0790 0.46 -0.0
943,608 + Rru_A0790 0.56 +0.3
943,694 + Rru_A0790 0.62 -1.4
943,694 + Rru_A0790 0.62 -0.0
943,694 + Rru_A0790 0.62 -0.0
943,695 - Rru_A0790 0.62 -1.0
943,695 - Rru_A0790 0.62 +0.9
943,981 - Rru_A0790 0.83 -0.0
944,165 + +0.7
944,366 + Rru_A0791 0.13 +0.2
944,367 - Rru_A0791 0.13 +0.5
944,367 - Rru_A0791 0.13 +0.4
944,384 + Rru_A0791 0.16 -1.0
944,384 + Rru_A0791 0.16 +0.2
944,384 + Rru_A0791 0.16 -0.0
944,384 + Rru_A0791 0.16 +0.2
944,384 + Rru_A0791 0.16 +0.3
944,384 + Rru_A0791 0.16 -0.5
944,385 - Rru_A0791 0.16 +0.5
944,447 + Rru_A0791 0.24 -0.0
944,448 - Rru_A0791 0.24 -0.0
944,513 + Rru_A0791 0.32 -0.0
944,514 - Rru_A0791 0.32 +0.7
944,543 + Rru_A0791 0.36 +1.2
944,543 + Rru_A0791 0.36 -0.5
944,544 - Rru_A0791 0.36 +0.3
944,945 - Rru_A0791 0.87 -0.0
944,969 + Rru_A0791 0.90 +1.2
944,970 - Rru_A0791 0.90 -0.0

Or see this region's nucleotide sequence