Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0780

Experiment: acetate; Light intensity 9 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0779 and Rru_A0780 are separated by 3 nucleotidesRru_A0780 and Rru_A0781 overlap by 4 nucleotides Rru_A0779: Rru_A0779 - extracellular solute-binding protein, family 3 (NCBI), at 931,092 to 932,144 _A0779 Rru_A0780: Rru_A0780 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 932,148 to 933,311 _A0780 Rru_A0781: Rru_A0781 - Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine (NCBI), at 933,308 to 934,411 _A0781 Position (kb) 932 933 934Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 931.419 kb on - strand, within Rru_A0779at 931.625 kb on + strand, within Rru_A0779at 931.626 kb on - strand, within Rru_A0779at 931.764 kb on + strand, within Rru_A0779at 931.764 kb on + strand, within Rru_A0779at 931.764 kb on + strand, within Rru_A0779at 931.860 kb on + strand, within Rru_A0779at 931.860 kb on + strand, within Rru_A0779at 931.860 kb on + strand, within Rru_A0779at 931.861 kb on - strand, within Rru_A0779at 931.861 kb on - strand, within Rru_A0779at 931.928 kb on + strand, within Rru_A0779at 931.929 kb on - strand, within Rru_A0779at 931.929 kb on - strand, within Rru_A0779at 932.004 kb on + strand, within Rru_A0779at 932.005 kb on - strand, within Rru_A0779at 932.005 kb on - strand, within Rru_A0779at 932.007 kb on - strand, within Rru_A0779at 932.007 kb on - strand, within Rru_A0779at 932.007 kb on - strand, within Rru_A0779at 932.094 kb on - strandat 932.125 kb on - strandat 932.171 kb on - strandat 932.171 kb on - strandat 932.268 kb on - strand, within Rru_A0780at 932.361 kb on + strand, within Rru_A0780at 932.361 kb on + strand, within Rru_A0780at 932.361 kb on + strand, within Rru_A0780at 932.361 kb on + strand, within Rru_A0780at 932.361 kb on + strand, within Rru_A0780at 932.362 kb on - strand, within Rru_A0780at 932.362 kb on - strand, within Rru_A0780at 932.363 kb on + strand, within Rru_A0780at 932.363 kb on + strand, within Rru_A0780at 932.363 kb on + strand, within Rru_A0780at 932.363 kb on + strand, within Rru_A0780at 932.363 kb on + strand, within Rru_A0780at 932.364 kb on - strand, within Rru_A0780at 932.364 kb on - strand, within Rru_A0780at 932.364 kb on - strand, within Rru_A0780at 932.364 kb on - strand, within Rru_A0780at 932.379 kb on + strand, within Rru_A0780at 932.379 kb on + strand, within Rru_A0780at 932.379 kb on + strand, within Rru_A0780at 932.379 kb on + strand, within Rru_A0780at 932.380 kb on - strand, within Rru_A0780at 932.520 kb on + strand, within Rru_A0780at 932.520 kb on + strand, within Rru_A0780at 932.521 kb on - strand, within Rru_A0780at 932.521 kb on - strand, within Rru_A0780at 932.521 kb on - strand, within Rru_A0780at 932.521 kb on - strand, within Rru_A0780at 932.541 kb on - strand, within Rru_A0780at 932.652 kb on + strand, within Rru_A0780at 932.652 kb on + strand, within Rru_A0780at 932.652 kb on + strand, within Rru_A0780at 932.653 kb on - strand, within Rru_A0780at 932.653 kb on - strand, within Rru_A0780at 932.653 kb on - strand, within Rru_A0780at 932.653 kb on - strand, within Rru_A0780at 932.654 kb on + strand, within Rru_A0780at 932.654 kb on + strand, within Rru_A0780at 932.654 kb on + strand, within Rru_A0780at 932.654 kb on + strand, within Rru_A0780at 933.111 kb on + strand, within Rru_A0780at 933.183 kb on - strand, within Rru_A0780at 933.183 kb on - strand, within Rru_A0780at 933.241 kb on - strandat 933.241 kb on - strandat 933.364 kb on + strandat 933.421 kb on + strand, within Rru_A0781at 933.421 kb on + strand, within Rru_A0781at 933.421 kb on + strand, within Rru_A0781at 933.421 kb on + strand, within Rru_A0781at 933.421 kb on + strand, within Rru_A0781at 933.422 kb on - strand, within Rru_A0781at 933.422 kb on - strand, within Rru_A0781at 933.422 kb on - strand, within Rru_A0781at 933.422 kb on - strand, within Rru_A0781at 933.944 kb on + strand, within Rru_A0781at 933.944 kb on + strand, within Rru_A0781at 933.944 kb on + strand, within Rru_A0781at 933.944 kb on + strand, within Rru_A0781at 933.945 kb on - strand, within Rru_A0781at 933.945 kb on - strand, within Rru_A0781at 934.044 kb on - strand, within Rru_A0781at 934.044 kb on - strand, within Rru_A0781at 934.094 kb on + strand, within Rru_A0781at 934.094 kb on + strand, within Rru_A0781at 934.095 kb on - strand, within Rru_A0781at 934.095 kb on - strand, within Rru_A0781at 934.125 kb on - strand, within Rru_A0781at 934.302 kb on - strandat 934.302 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
remove
931,419 - Rru_A0779 0.31 -0.0
931,625 + Rru_A0779 0.51 -0.0
931,626 - Rru_A0779 0.51 -0.3
931,764 + Rru_A0779 0.64 -0.0
931,764 + Rru_A0779 0.64 -0.0
931,764 + Rru_A0779 0.64 -0.1
931,860 + Rru_A0779 0.73 +0.9
931,860 + Rru_A0779 0.73 +0.1
931,860 + Rru_A0779 0.73 -0.0
931,861 - Rru_A0779 0.73 -0.0
931,861 - Rru_A0779 0.73 +0.4
931,928 + Rru_A0779 0.79 +1.1
931,929 - Rru_A0779 0.79 -0.4
931,929 - Rru_A0779 0.79 +0.7
932,004 + Rru_A0779 0.87 +1.2
932,005 - Rru_A0779 0.87 +0.2
932,005 - Rru_A0779 0.87 -1.0
932,007 - Rru_A0779 0.87 -0.0
932,007 - Rru_A0779 0.87 +1.1
932,007 - Rru_A0779 0.87 -3.3
932,094 - +0.4
932,125 - -0.3
932,171 - +0.8
932,171 - -0.2
932,268 - Rru_A0780 0.10 -0.0
932,361 + Rru_A0780 0.18 +0.7
932,361 + Rru_A0780 0.18 -0.0
932,361 + Rru_A0780 0.18 +0.6
932,361 + Rru_A0780 0.18 +0.5
932,361 + Rru_A0780 0.18 +0.8
932,362 - Rru_A0780 0.18 +0.6
932,362 - Rru_A0780 0.18 -0.0
932,363 + Rru_A0780 0.18 -0.0
932,363 + Rru_A0780 0.18 +1.2
932,363 + Rru_A0780 0.18 +1.2
932,363 + Rru_A0780 0.18 +0.6
932,363 + Rru_A0780 0.18 +0.3
932,364 - Rru_A0780 0.19 -0.8
932,364 - Rru_A0780 0.19 -0.0
932,364 - Rru_A0780 0.19 -0.0
932,364 - Rru_A0780 0.19 +0.7
932,379 + Rru_A0780 0.20 -1.0
932,379 + Rru_A0780 0.20 +2.4
932,379 + Rru_A0780 0.20 +0.4
932,379 + Rru_A0780 0.20 -1.0
932,380 - Rru_A0780 0.20 -0.0
932,520 + Rru_A0780 0.32 +0.8
932,520 + Rru_A0780 0.32 -0.0
932,521 - Rru_A0780 0.32 -0.0
932,521 - Rru_A0780 0.32 -0.1
932,521 - Rru_A0780 0.32 -1.0
932,521 - Rru_A0780 0.32 -0.0
932,541 - Rru_A0780 0.34 -0.1
932,652 + Rru_A0780 0.43 +0.3
932,652 + Rru_A0780 0.43 +0.2
932,652 + Rru_A0780 0.43 -0.0
932,653 - Rru_A0780 0.43 +0.5
932,653 - Rru_A0780 0.43 -0.0
932,653 - Rru_A0780 0.43 +0.3
932,653 - Rru_A0780 0.43 +0.3
932,654 + Rru_A0780 0.43 +0.8
932,654 + Rru_A0780 0.43 +2.0
932,654 + Rru_A0780 0.43 -0.0
932,654 + Rru_A0780 0.43 -0.0
933,111 + Rru_A0780 0.83 -0.0
933,183 - Rru_A0780 0.89 -0.0
933,183 - Rru_A0780 0.89 +0.1
933,241 - +1.2
933,241 - +0.5
933,364 + +0.1
933,421 + Rru_A0781 0.10 +0.5
933,421 + Rru_A0781 0.10 -0.0
933,421 + Rru_A0781 0.10 +0.4
933,421 + Rru_A0781 0.10 +0.3
933,421 + Rru_A0781 0.10 +1.0
933,422 - Rru_A0781 0.10 -0.3
933,422 - Rru_A0781 0.10 -0.0
933,422 - Rru_A0781 0.10 +0.3
933,422 - Rru_A0781 0.10 +0.6
933,944 + Rru_A0781 0.58 -0.0
933,944 + Rru_A0781 0.58 -0.2
933,944 + Rru_A0781 0.58 +1.0
933,944 + Rru_A0781 0.58 -0.0
933,945 - Rru_A0781 0.58 -0.0
933,945 - Rru_A0781 0.58 +1.3
934,044 - Rru_A0781 0.67 +0.9
934,044 - Rru_A0781 0.67 -0.0
934,094 + Rru_A0781 0.71 -1.0
934,094 + Rru_A0781 0.71 -0.0
934,095 - Rru_A0781 0.71 -1.0
934,095 - Rru_A0781 0.71 +0.2
934,125 - Rru_A0781 0.74 -0.0
934,302 - +0.9
934,302 - +0.6

Or see this region's nucleotide sequence