Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0769

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0768 and Rru_A0769 are separated by 229 nucleotidesRru_A0769 and Rru_A0770 are separated by 317 nucleotides Rru_A0768: Rru_A0768 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 905,317 to 906,993 _A0768 Rru_A0769: Rru_A0769 - extracellular solute-binding protein, family 1 (NCBI), at 907,223 to 908,266 _A0769 Rru_A0770: Rru_A0770 - Peptidase M23B (NCBI), at 908,584 to 910,185 _A0770 Position (kb) 907 908 909Strain fitness (log2 ratio) -1 0 1 2at 906.331 kb on - strand, within Rru_A0768at 906.477 kb on + strand, within Rru_A0768at 906.478 kb on - strand, within Rru_A0768at 906.518 kb on + strand, within Rru_A0768at 906.518 kb on + strand, within Rru_A0768at 906.518 kb on + strand, within Rru_A0768at 906.518 kb on + strand, within Rru_A0768at 906.524 kb on + strand, within Rru_A0768at 906.525 kb on - strand, within Rru_A0768at 906.530 kb on + strand, within Rru_A0768at 906.531 kb on - strand, within Rru_A0768at 906.668 kb on + strand, within Rru_A0768at 906.668 kb on + strand, within Rru_A0768at 906.668 kb on + strand, within Rru_A0768at 906.669 kb on - strand, within Rru_A0768at 906.669 kb on - strand, within Rru_A0768at 906.679 kb on + strand, within Rru_A0768at 906.825 kb on + strand, within Rru_A0768at 906.825 kb on + strand, within Rru_A0768at 907.398 kb on + strand, within Rru_A0769at 907.399 kb on - strand, within Rru_A0769at 907.590 kb on + strand, within Rru_A0769at 907.591 kb on - strand, within Rru_A0769at 907.593 kb on + strand, within Rru_A0769at 907.593 kb on + strand, within Rru_A0769at 907.593 kb on + strand, within Rru_A0769at 907.594 kb on - strand, within Rru_A0769at 907.761 kb on + strand, within Rru_A0769at 907.762 kb on - strand, within Rru_A0769at 907.762 kb on - strand, within Rru_A0769at 907.825 kb on - strand, within Rru_A0769at 907.825 kb on - strand, within Rru_A0769at 907.825 kb on - strand, within Rru_A0769at 907.933 kb on + strand, within Rru_A0769at 907.933 kb on + strand, within Rru_A0769at 907.934 kb on - strand, within Rru_A0769at 907.934 kb on - strand, within Rru_A0769at 907.934 kb on - strand, within Rru_A0769at 908.163 kb on + strandat 908.163 kb on + strandat 908.163 kb on + strandat 908.163 kb on + strandat 908.163 kb on + strandat 908.163 kb on + strandat 908.163 kb on + strandat 908.163 kb on + strandat 908.163 kb on + strandat 908.164 kb on - strandat 908.164 kb on - strandat 908.164 kb on - strandat 908.164 kb on - strandat 908.164 kb on - strandat 908.164 kb on - strandat 908.271 kb on + strandat 908.271 kb on + strandat 908.271 kb on + strandat 908.324 kb on - strandat 908.324 kb on - strandat 908.585 kb on + strandat 908.585 kb on + strandat 908.585 kb on + strandat 908.585 kb on + strandat 908.586 kb on - strandat 908.856 kb on + strand, within Rru_A0770at 908.856 kb on + strand, within Rru_A0770at 908.864 kb on + strand, within Rru_A0770at 908.865 kb on - strand, within Rru_A0770at 908.865 kb on - strand, within Rru_A0770at 908.876 kb on + strand, within Rru_A0770at 908.877 kb on - strand, within Rru_A0770at 908.903 kb on + strand, within Rru_A0770at 909.000 kb on + strand, within Rru_A0770at 909.000 kb on + strand, within Rru_A0770at 909.001 kb on - strand, within Rru_A0770at 909.120 kb on - strand, within Rru_A0770at 909.120 kb on - strand, within Rru_A0770at 909.141 kb on + strand, within Rru_A0770at 909.142 kb on - strand, within Rru_A0770at 909.237 kb on - strand, within Rru_A0770at 909.237 kb on - strand, within Rru_A0770at 909.239 kb on + strand, within Rru_A0770at 909.240 kb on - strand, within Rru_A0770

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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906,331 - Rru_A0768 0.60 +0.5
906,477 + Rru_A0768 0.69 -0.0
906,478 - Rru_A0768 0.69 -0.0
906,518 + Rru_A0768 0.72 -0.0
906,518 + Rru_A0768 0.72 -0.0
906,518 + Rru_A0768 0.72 -0.0
906,518 + Rru_A0768 0.72 +0.2
906,524 + Rru_A0768 0.72 -0.0
906,525 - Rru_A0768 0.72 -0.3
906,530 + Rru_A0768 0.72 -0.0
906,531 - Rru_A0768 0.72 -0.0
906,668 + Rru_A0768 0.81 -0.0
906,668 + Rru_A0768 0.81 +0.4
906,668 + Rru_A0768 0.81 +1.1
906,669 - Rru_A0768 0.81 -0.0
906,669 - Rru_A0768 0.81 -0.0
906,679 + Rru_A0768 0.81 -0.0
906,825 + Rru_A0768 0.90 +1.1
906,825 + Rru_A0768 0.90 -0.0
907,398 + Rru_A0769 0.17 -0.0
907,399 - Rru_A0769 0.17 +1.4
907,590 + Rru_A0769 0.35 +0.4
907,591 - Rru_A0769 0.35 -0.1
907,593 + Rru_A0769 0.35 -0.0
907,593 + Rru_A0769 0.35 -0.1
907,593 + Rru_A0769 0.35 +0.6
907,594 - Rru_A0769 0.36 -0.0
907,761 + Rru_A0769 0.52 -0.0
907,762 - Rru_A0769 0.52 -0.0
907,762 - Rru_A0769 0.52 +0.9
907,825 - Rru_A0769 0.58 -0.0
907,825 - Rru_A0769 0.58 -0.0
907,825 - Rru_A0769 0.58 -0.0
907,933 + Rru_A0769 0.68 +1.9
907,933 + Rru_A0769 0.68 -0.0
907,934 - Rru_A0769 0.68 -0.0
907,934 - Rru_A0769 0.68 +0.6
907,934 - Rru_A0769 0.68 +0.8
908,163 + -0.0
908,163 + -0.0
908,163 + -0.0
908,163 + +1.1
908,163 + -0.0
908,163 + +0.7
908,163 + -0.0
908,163 + -0.0
908,163 + -0.0
908,164 - -0.0
908,164 - -0.0
908,164 - -0.0
908,164 - +0.3
908,164 - -0.0
908,164 - -0.0
908,271 + +1.0
908,271 + -0.0
908,271 + -0.0
908,324 - +0.1
908,324 - +0.2
908,585 + -0.0
908,585 + +0.5
908,585 + +0.4
908,585 + -0.0
908,586 - -1.0
908,856 + Rru_A0770 0.17 -1.0
908,856 + Rru_A0770 0.17 -0.0
908,864 + Rru_A0770 0.17 -0.0
908,865 - Rru_A0770 0.18 -0.0
908,865 - Rru_A0770 0.18 -0.0
908,876 + Rru_A0770 0.18 -0.0
908,877 - Rru_A0770 0.18 -0.6
908,903 + Rru_A0770 0.20 -0.0
909,000 + Rru_A0770 0.26 -0.0
909,000 + Rru_A0770 0.26 -0.0
909,001 - Rru_A0770 0.26 -0.0
909,120 - Rru_A0770 0.33 +0.2
909,120 - Rru_A0770 0.33 -0.0
909,141 + Rru_A0770 0.35 -0.0
909,142 - Rru_A0770 0.35 -0.0
909,237 - Rru_A0770 0.41 -0.0
909,237 - Rru_A0770 0.41 -0.0
909,239 + Rru_A0770 0.41 -0.0
909,240 - Rru_A0770 0.41 -1.0

Or see this region's nucleotide sequence