Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0754

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0753 and Rru_A0754 overlap by 4 nucleotidesRru_A0754 and Rru_A0755 are separated by 63 nucleotides Rru_A0753: Rru_A0753 - Chaperone clpB (NCBI), at 882,809 to 885,421 _A0753 Rru_A0754: Rru_A0754 - hypothetical protein (NCBI), at 885,418 to 886,488 _A0754 Rru_A0755: Rru_A0755 - chemotaxis sensory transducer (NCBI), at 886,552 to 888,255 _A0755 Position (kb) 885 886 887Strain fitness (log2 ratio) -2 -1 0 1at 884.729 kb on + strand, within Rru_A0753at 884.729 kb on + strand, within Rru_A0753at 884.729 kb on + strand, within Rru_A0753at 884.729 kb on + strand, within Rru_A0753at 884.729 kb on + strand, within Rru_A0753at 884.730 kb on - strand, within Rru_A0753at 884.730 kb on - strand, within Rru_A0753at 884.730 kb on - strand, within Rru_A0753at 884.730 kb on - strand, within Rru_A0753at 884.777 kb on + strand, within Rru_A0753at 884.778 kb on - strand, within Rru_A0753at 884.778 kb on - strand, within Rru_A0753at 884.832 kb on - strand, within Rru_A0753at 884.953 kb on + strand, within Rru_A0753at 884.954 kb on - strand, within Rru_A0753at 885.242 kb on + strandat 885.243 kb on - strandat 885.243 kb on - strandat 885.243 kb on - strandat 885.254 kb on + strandat 885.254 kb on + strandat 885.255 kb on - strandat 885.255 kb on - strandat 885.598 kb on + strand, within Rru_A0754at 885.598 kb on + strand, within Rru_A0754at 885.598 kb on + strand, within Rru_A0754at 885.670 kb on - strand, within Rru_A0754at 885.670 kb on - strand, within Rru_A0754at 885.670 kb on - strand, within Rru_A0754at 886.015 kb on + strand, within Rru_A0754at 886.015 kb on + strand, within Rru_A0754at 886.016 kb on - strand, within Rru_A0754at 886.016 kb on - strand, within Rru_A0754at 886.016 kb on - strand, within Rru_A0754at 886.093 kb on - strand, within Rru_A0754at 886.201 kb on + strand, within Rru_A0754at 886.201 kb on + strand, within Rru_A0754at 886.201 kb on + strand, within Rru_A0754at 886.201 kb on + strand, within Rru_A0754at 886.420 kb on + strandat 886.420 kb on + strandat 886.421 kb on - strandat 886.421 kb on - strandat 886.562 kb on + strandat 886.563 kb on - strandat 886.671 kb on + strandat 886.671 kb on + strandat 886.698 kb on + strandat 886.699 kb on - strandat 886.715 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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884,729 + Rru_A0753 0.73 -0.0
884,729 + Rru_A0753 0.73 -0.0
884,729 + Rru_A0753 0.73 -1.0
884,729 + Rru_A0753 0.73 -0.0
884,729 + Rru_A0753 0.73 -0.0
884,730 - Rru_A0753 0.74 -0.0
884,730 - Rru_A0753 0.74 +0.1
884,730 - Rru_A0753 0.74 -0.0
884,730 - Rru_A0753 0.74 -0.0
884,777 + Rru_A0753 0.75 -1.0
884,778 - Rru_A0753 0.75 -1.1
884,778 - Rru_A0753 0.75 -0.0
884,832 - Rru_A0753 0.77 -0.0
884,953 + Rru_A0753 0.82 -0.0
884,954 - Rru_A0753 0.82 -0.0
885,242 + -0.0
885,243 - -0.4
885,243 - -0.0
885,243 - -1.0
885,254 + -1.0
885,254 + -1.0
885,255 - -0.0
885,255 - -0.0
885,598 + Rru_A0754 0.17 +1.2
885,598 + Rru_A0754 0.17 -2.0
885,598 + Rru_A0754 0.17 +1.1
885,670 - Rru_A0754 0.24 -0.0
885,670 - Rru_A0754 0.24 +0.9
885,670 - Rru_A0754 0.24 +0.8
886,015 + Rru_A0754 0.56 -1.0
886,015 + Rru_A0754 0.56 +0.4
886,016 - Rru_A0754 0.56 -0.0
886,016 - Rru_A0754 0.56 -0.0
886,016 - Rru_A0754 0.56 +0.7
886,093 - Rru_A0754 0.63 +0.5
886,201 + Rru_A0754 0.73 -1.8
886,201 + Rru_A0754 0.73 -0.0
886,201 + Rru_A0754 0.73 -0.0
886,201 + Rru_A0754 0.73 -0.0
886,420 + -1.0
886,420 + +0.6
886,421 - +0.1
886,421 - -1.0
886,562 + +0.9
886,563 - -0.0
886,671 + +0.5
886,671 + -0.0
886,698 + +0.5
886,699 - +0.6
886,715 - -0.0

Or see this region's nucleotide sequence