Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0741

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0739 and Rru_A0740 are separated by 43 nucleotidesRru_A0740 and Rru_A0741 are separated by 20 nucleotidesRru_A0741 and Rru_A0742 are separated by 256 nucleotides Rru_A0739: Rru_A0739 - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (NCBI), at 864,378 to 865,217 _A0739 Rru_A0740: Rru_A0740 - Protein of unknown function DUF1178 (NCBI), at 865,261 to 865,794 _A0740 Rru_A0741: Rru_A0741 - Signal Transduction Histidine Kinase (NCBI), at 865,815 to 867,311 _A0741 Rru_A0742: Rru_A0742 - Ubiquinone biosynthesis O-methyltransferase (NCBI), at 867,568 to 868,317 _A0742 Position (kb) 865 866 867 868Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 864.859 kb on - strand, within Rru_A0739at 864.912 kb on + strand, within Rru_A0739at 864.913 kb on - strand, within Rru_A0739at 865.002 kb on + strand, within Rru_A0739at 865.002 kb on + strand, within Rru_A0739at 865.003 kb on - strand, within Rru_A0739at 865.003 kb on - strand, within Rru_A0739at 865.003 kb on - strand, within Rru_A0739at 865.003 kb on - strand, within Rru_A0739at 865.003 kb on - strand, within Rru_A0739at 865.054 kb on - strand, within Rru_A0739at 865.054 kb on - strand, within Rru_A0739at 865.054 kb on - strand, within Rru_A0739at 865.209 kb on - strandat 865.288 kb on + strandat 865.288 kb on + strandat 865.288 kb on + strandat 865.288 kb on + strandat 865.289 kb on - strandat 865.289 kb on - strandat 865.290 kb on + strandat 865.290 kb on + strandat 865.290 kb on + strandat 865.702 kb on + strand, within Rru_A0740at 865.702 kb on + strand, within Rru_A0740at 865.702 kb on + strand, within Rru_A0740at 865.702 kb on + strand, within Rru_A0740at 865.702 kb on + strand, within Rru_A0740at 865.703 kb on - strand, within Rru_A0740at 865.703 kb on - strand, within Rru_A0740at 865.703 kb on - strand, within Rru_A0740at 865.703 kb on - strand, within Rru_A0740at 865.703 kb on - strand, within Rru_A0740at 865.942 kb on + strandat 865.942 kb on + strandat 865.942 kb on + strandat 865.942 kb on + strandat 865.942 kb on + strandat 865.943 kb on - strandat 865.943 kb on - strandat 865.943 kb on - strandat 865.943 kb on - strandat 865.955 kb on + strandat 865.955 kb on + strandat 865.956 kb on - strandat 866.061 kb on - strand, within Rru_A0741at 866.061 kb on - strand, within Rru_A0741at 866.098 kb on + strand, within Rru_A0741at 866.098 kb on + strand, within Rru_A0741at 866.098 kb on + strand, within Rru_A0741at 866.119 kb on - strand, within Rru_A0741at 866.282 kb on + strand, within Rru_A0741at 866.282 kb on + strand, within Rru_A0741at 866.283 kb on - strand, within Rru_A0741at 866.283 kb on - strand, within Rru_A0741at 866.283 kb on - strand, within Rru_A0741at 866.283 kb on - strand, within Rru_A0741at 866.540 kb on - strand, within Rru_A0741at 866.678 kb on + strand, within Rru_A0741at 866.711 kb on + strand, within Rru_A0741at 866.723 kb on + strand, within Rru_A0741at 866.723 kb on + strand, within Rru_A0741at 866.723 kb on + strand, within Rru_A0741at 866.723 kb on + strand, within Rru_A0741at 866.724 kb on - strand, within Rru_A0741at 866.724 kb on - strand, within Rru_A0741at 866.725 kb on + strand, within Rru_A0741at 866.725 kb on + strand, within Rru_A0741at 866.726 kb on - strand, within Rru_A0741at 867.034 kb on + strand, within Rru_A0741at 867.034 kb on + strand, within Rru_A0741at 867.034 kb on + strand, within Rru_A0741at 867.034 kb on + strand, within Rru_A0741at 867.035 kb on - strand, within Rru_A0741at 867.035 kb on - strand, within Rru_A0741at 867.035 kb on - strand, within Rru_A0741at 867.188 kb on - strandat 867.188 kb on - strandat 867.229 kb on - strandat 867.446 kb on + strandat 867.446 kb on + strandat 867.446 kb on + strandat 867.446 kb on + strandat 867.446 kb on + strandat 867.446 kb on + strandat 867.446 kb on + strandat 867.447 kb on - strandat 867.450 kb on + strandat 867.450 kb on + strandat 867.450 kb on + strandat 867.490 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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864,859 - Rru_A0739 0.57 -0.0
864,912 + Rru_A0739 0.64 -0.0
864,913 - Rru_A0739 0.64 +0.9
865,002 + Rru_A0739 0.74 -1.0
865,002 + Rru_A0739 0.74 +0.3
865,003 - Rru_A0739 0.74 +0.7
865,003 - Rru_A0739 0.74 -0.0
865,003 - Rru_A0739 0.74 +0.9
865,003 - Rru_A0739 0.74 +1.2
865,003 - Rru_A0739 0.74 -0.0
865,054 - Rru_A0739 0.80 -0.0
865,054 - Rru_A0739 0.80 +0.8
865,054 - Rru_A0739 0.80 +1.0
865,209 - -0.0
865,288 + +0.4
865,288 + +0.8
865,288 + +1.2
865,288 + -0.0
865,289 - -0.0
865,289 - -0.0
865,290 + +0.5
865,290 + +0.1
865,290 + -0.1
865,702 + Rru_A0740 0.83 +0.1
865,702 + Rru_A0740 0.83 -0.9
865,702 + Rru_A0740 0.83 -0.0
865,702 + Rru_A0740 0.83 -2.0
865,702 + Rru_A0740 0.83 -0.6
865,703 - Rru_A0740 0.83 +0.8
865,703 - Rru_A0740 0.83 -0.0
865,703 - Rru_A0740 0.83 -0.0
865,703 - Rru_A0740 0.83 -1.0
865,703 - Rru_A0740 0.83 -0.0
865,942 + -0.0
865,942 + -0.0
865,942 + -0.0
865,942 + +0.4
865,942 + -0.0
865,943 - -1.0
865,943 - -1.4
865,943 - -0.8
865,943 - -0.0
865,955 + -1.5
865,955 + -1.9
865,956 - -1.6
866,061 - Rru_A0741 0.16 +1.8
866,061 - Rru_A0741 0.16 -0.0
866,098 + Rru_A0741 0.19 -0.0
866,098 + Rru_A0741 0.19 -0.0
866,098 + Rru_A0741 0.19 -0.6
866,119 - Rru_A0741 0.20 -0.0
866,282 + Rru_A0741 0.31 -0.0
866,282 + Rru_A0741 0.31 -0.0
866,283 - Rru_A0741 0.31 -1.2
866,283 - Rru_A0741 0.31 -0.8
866,283 - Rru_A0741 0.31 -0.0
866,283 - Rru_A0741 0.31 -1.6
866,540 - Rru_A0741 0.48 -0.1
866,678 + Rru_A0741 0.58 -0.0
866,711 + Rru_A0741 0.60 -0.0
866,723 + Rru_A0741 0.61 -0.9
866,723 + Rru_A0741 0.61 -0.0
866,723 + Rru_A0741 0.61 -0.9
866,723 + Rru_A0741 0.61 -0.4
866,724 - Rru_A0741 0.61 -0.0
866,724 - Rru_A0741 0.61 -2.8
866,725 + Rru_A0741 0.61 -0.0
866,725 + Rru_A0741 0.61 -0.6
866,726 - Rru_A0741 0.61 -0.0
867,034 + Rru_A0741 0.81 -0.8
867,034 + Rru_A0741 0.81 -0.0
867,034 + Rru_A0741 0.81 -0.0
867,034 + Rru_A0741 0.81 -0.6
867,035 - Rru_A0741 0.81 -2.8
867,035 - Rru_A0741 0.81 -0.0
867,035 - Rru_A0741 0.81 -0.0
867,188 - -0.0
867,188 - -0.0
867,229 - -1.7
867,446 + -0.0
867,446 + -0.0
867,446 + -0.0
867,446 + -1.6
867,446 + -0.0
867,446 + -0.0
867,446 + -0.9
867,447 - +1.4
867,450 + -1.4
867,450 + -4.7
867,450 + -0.0
867,490 + +0.6

Or see this region's nucleotide sequence