Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0723

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0721 and Rru_A0722 overlap by 4 nucleotidesRru_A0722 and Rru_A0723 are separated by 225 nucleotidesRru_A0723 and Rru_A0724 overlap by 4 nucleotidesRru_A0724 and Rru_A0725 are separated by 4 nucleotides Rru_A0721: Rru_A0721 - Anti-Sigm factor, ChrR (NCBI), at 849,388 to 850,062 _A0721 Rru_A0722: Rru_A0722 - Sigma-24 (FecI) (NCBI), at 850,059 to 850,679 _A0722 Rru_A0723: Rru_A0723 - Amine oxidase (NCBI), at 850,905 to 852,290 _A0723 Rru_A0724: Rru_A0724 - Protein of unknown function DUF1365 (NCBI), at 852,287 to 853,108 _A0724 Rru_A0725: Rru_A0725 - Cyclopropane-fatty-acyl-phospholipid synthase (NCBI), at 853,113 to 854,396 _A0725 Position (kb) 850 851 852 853Strain fitness (log2 ratio) -2 -1 0 1 2at 850.344 kb on - strand, within Rru_A0722at 850.368 kb on - strand, within Rru_A0722at 850.505 kb on - strand, within Rru_A0722at 850.505 kb on - strand, within Rru_A0722at 850.804 kb on + strandat 850.804 kb on + strandat 850.804 kb on + strandat 850.805 kb on - strandat 850.848 kb on + strandat 850.848 kb on + strandat 850.848 kb on + strandat 850.848 kb on + strandat 850.848 kb on + strandat 850.862 kb on + strandat 850.862 kb on + strandat 850.904 kb on + strandat 850.915 kb on + strandat 850.915 kb on + strandat 850.916 kb on - strandat 851.031 kb on + strandat 851.031 kb on + strandat 851.031 kb on + strandat 851.031 kb on + strandat 851.032 kb on - strandat 851.061 kb on - strand, within Rru_A0723at 851.127 kb on + strand, within Rru_A0723at 851.127 kb on + strand, within Rru_A0723at 851.128 kb on - strand, within Rru_A0723at 851.128 kb on - strand, within Rru_A0723at 851.130 kb on - strand, within Rru_A0723at 851.130 kb on - strand, within Rru_A0723at 851.142 kb on + strand, within Rru_A0723at 851.143 kb on - strand, within Rru_A0723at 851.238 kb on + strand, within Rru_A0723at 851.397 kb on - strand, within Rru_A0723at 851.409 kb on + strand, within Rru_A0723at 851.491 kb on - strand, within Rru_A0723at 851.590 kb on - strand, within Rru_A0723at 851.594 kb on + strand, within Rru_A0723at 851.723 kb on + strand, within Rru_A0723at 851.841 kb on - strand, within Rru_A0723at 851.928 kb on + strand, within Rru_A0723at 851.928 kb on + strand, within Rru_A0723at 852.027 kb on + strand, within Rru_A0723at 852.027 kb on + strand, within Rru_A0723at 852.033 kb on + strand, within Rru_A0723at 852.033 kb on + strand, within Rru_A0723at 852.034 kb on - strand, within Rru_A0723at 852.126 kb on + strand, within Rru_A0723at 852.126 kb on + strand, within Rru_A0723at 852.126 kb on + strand, within Rru_A0723at 852.127 kb on - strand, within Rru_A0723at 852.305 kb on + strandat 852.305 kb on + strandat 852.305 kb on + strandat 852.306 kb on - strandat 852.359 kb on + strandat 852.359 kb on + strandat 852.359 kb on + strandat 852.360 kb on - strandat 852.361 kb on + strandat 852.362 kb on - strandat 852.362 kb on - strandat 852.503 kb on + strand, within Rru_A0724at 852.503 kb on + strand, within Rru_A0724at 852.503 kb on + strand, within Rru_A0724at 852.504 kb on - strand, within Rru_A0724at 852.504 kb on - strand, within Rru_A0724at 852.506 kb on - strand, within Rru_A0724at 852.588 kb on - strand, within Rru_A0724at 852.637 kb on - strand, within Rru_A0724at 852.653 kb on + strand, within Rru_A0724at 852.653 kb on + strand, within Rru_A0724at 852.689 kb on + strand, within Rru_A0724at 852.689 kb on + strand, within Rru_A0724at 852.690 kb on - strand, within Rru_A0724at 852.749 kb on + strand, within Rru_A0724at 852.749 kb on + strand, within Rru_A0724at 852.750 kb on - strand, within Rru_A0724at 852.750 kb on - strand, within Rru_A0724at 852.782 kb on + strand, within Rru_A0724at 852.782 kb on + strand, within Rru_A0724at 852.782 kb on + strand, within Rru_A0724at 852.782 kb on + strand, within Rru_A0724at 852.782 kb on + strand, within Rru_A0724at 852.782 kb on + strand, within Rru_A0724at 852.783 kb on - strand, within Rru_A0724at 853.106 kb on + strandat 853.107 kb on - strandat 853.107 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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850,344 - Rru_A0722 0.46 +0.7
850,368 - Rru_A0722 0.50 -0.0
850,505 - Rru_A0722 0.72 +0.3
850,505 - Rru_A0722 0.72 +0.1
850,804 + -0.0
850,804 + -0.0
850,804 + -0.0
850,805 - +0.6
850,848 + -1.3
850,848 + -1.4
850,848 + -2.0
850,848 + +0.4
850,848 + -0.0
850,862 + -1.0
850,862 + -1.4
850,904 + -0.0
850,915 + +0.9
850,915 + +0.6
850,916 - +0.9
851,031 + +0.5
851,031 + -0.0
851,031 + +0.4
851,031 + -0.3
851,032 - -0.0
851,061 - Rru_A0723 0.11 +0.2
851,127 + Rru_A0723 0.16 -0.0
851,127 + Rru_A0723 0.16 -0.0
851,128 - Rru_A0723 0.16 +0.7
851,128 - Rru_A0723 0.16 +0.4
851,130 - Rru_A0723 0.16 +0.1
851,130 - Rru_A0723 0.16 -0.0
851,142 + Rru_A0723 0.17 +0.4
851,143 - Rru_A0723 0.17 -0.4
851,238 + Rru_A0723 0.24 +0.4
851,397 - Rru_A0723 0.35 +0.6
851,409 + Rru_A0723 0.36 +0.2
851,491 - Rru_A0723 0.42 +0.7
851,590 - Rru_A0723 0.49 +2.5
851,594 + Rru_A0723 0.50 +1.0
851,723 + Rru_A0723 0.59 -1.0
851,841 - Rru_A0723 0.68 -0.8
851,928 + Rru_A0723 0.74 +1.6
851,928 + Rru_A0723 0.74 +0.2
852,027 + Rru_A0723 0.81 -0.0
852,027 + Rru_A0723 0.81 +0.4
852,033 + Rru_A0723 0.81 +0.6
852,033 + Rru_A0723 0.81 -0.0
852,034 - Rru_A0723 0.81 +2.5
852,126 + Rru_A0723 0.88 +1.3
852,126 + Rru_A0723 0.88 +0.1
852,126 + Rru_A0723 0.88 -0.0
852,127 - Rru_A0723 0.88 +1.0
852,305 + +0.5
852,305 + +0.4
852,305 + -0.3
852,306 - +1.8
852,359 + +1.5
852,359 + +0.5
852,359 + +1.3
852,360 - +0.2
852,361 + +0.2
852,362 - +0.2
852,362 - -0.8
852,503 + Rru_A0724 0.26 +0.4
852,503 + Rru_A0724 0.26 +1.3
852,503 + Rru_A0724 0.26 -0.2
852,504 - Rru_A0724 0.26 -0.0
852,504 - Rru_A0724 0.26 +0.9
852,506 - Rru_A0724 0.27 -0.0
852,588 - Rru_A0724 0.37 +0.4
852,637 - Rru_A0724 0.43 +1.1
852,653 + Rru_A0724 0.45 +0.6
852,653 + Rru_A0724 0.45 -0.0
852,689 + Rru_A0724 0.49 -0.5
852,689 + Rru_A0724 0.49 +0.3
852,690 - Rru_A0724 0.49 -0.0
852,749 + Rru_A0724 0.56 +0.3
852,749 + Rru_A0724 0.56 +0.9
852,750 - Rru_A0724 0.56 -0.0
852,750 - Rru_A0724 0.56 -2.0
852,782 + Rru_A0724 0.60 +0.9
852,782 + Rru_A0724 0.60 +0.0
852,782 + Rru_A0724 0.60 -0.0
852,782 + Rru_A0724 0.60 +0.6
852,782 + Rru_A0724 0.60 -0.0
852,782 + Rru_A0724 0.60 -0.8
852,783 - Rru_A0724 0.60 +0.3
853,106 + -0.0
853,107 - +0.7
853,107 - -0.1

Or see this region's nucleotide sequence