Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0719 and Rru_A0720 are separated by 94 nucleotides Rru_A0720 and Rru_A0721 are separated by 52 nucleotides Rru_A0721 and Rru_A0722 overlap by 4 nucleotides Rru_A0722 and Rru_A0723 are separated by 225 nucleotides
Rru_A0719: Rru_A0719 - hypothetical protein (NCBI), at 847,991 to 848,746
_A0719
Rru_A0720: Rru_A0720 - Transcriptional Regulator, MarR family (NCBI), at 848,841 to 849,335
_A0720
Rru_A0721: Rru_A0721 - Anti-Sigm factor, ChrR (NCBI), at 849,388 to 850,062
_A0721
Rru_A0722: Rru_A0722 - Sigma-24 (FecI) (NCBI), at 850,059 to 850,679
_A0722
Rru_A0723: Rru_A0723 - Amine oxidase (NCBI), at 850,905 to 852,290
_A0723
Position (kb) 849
850
851 Strain fitness (log2 ratio) -2
-1
0
1 at 848.861 kb on + strand at 848.862 kb on - strand at 848.862 kb on - strand at 848.862 kb on - strand at 849.060 kb on - strand, within Rru_A0720 at 849.061 kb on + strand, within Rru_A0720 at 849.062 kb on - strand, within Rru_A0720 at 849.089 kb on + strand, within Rru_A0720 at 849.091 kb on + strand, within Rru_A0720 at 849.091 kb on + strand, within Rru_A0720 at 849.091 kb on + strand, within Rru_A0720 at 849.091 kb on + strand, within Rru_A0720 at 849.092 kb on - strand, within Rru_A0720 at 849.092 kb on - strand, within Rru_A0720 at 849.092 kb on - strand, within Rru_A0720 at 849.092 kb on - strand, within Rru_A0720 at 849.092 kb on - strand, within Rru_A0720 at 849.112 kb on + strand, within Rru_A0720 at 849.112 kb on + strand, within Rru_A0720 at 849.112 kb on + strand, within Rru_A0720 at 849.113 kb on - strand, within Rru_A0720 at 849.113 kb on - strand, within Rru_A0720 at 849.113 kb on - strand, within Rru_A0720 at 849.115 kb on + strand, within Rru_A0720 at 849.165 kb on - strand, within Rru_A0720 at 849.194 kb on + strand, within Rru_A0720 at 849.194 kb on + strand, within Rru_A0720 at 849.195 kb on - strand, within Rru_A0720 at 849.195 kb on - strand, within Rru_A0720 at 849.195 kb on - strand, within Rru_A0720 at 849.284 kb on - strand, within Rru_A0720 at 849.300 kb on + strand at 849.300 kb on + strand at 849.383 kb on + strand at 849.389 kb on + strand at 849.389 kb on + strand at 849.389 kb on + strand at 849.390 kb on - strand at 849.434 kb on + strand at 849.584 kb on + strand, within Rru_A0721 at 849.584 kb on + strand, within Rru_A0721 at 849.584 kb on + strand, within Rru_A0721 at 849.584 kb on + strand, within Rru_A0721 at 849.584 kb on + strand, within Rru_A0721 at 849.584 kb on + strand, within Rru_A0721 at 849.585 kb on - strand, within Rru_A0721 at 849.585 kb on - strand, within Rru_A0721 at 849.585 kb on - strand, within Rru_A0721 at 849.585 kb on - strand, within Rru_A0721 at 849.585 kb on - strand, within Rru_A0721 at 849.585 kb on - strand, within Rru_A0721 at 849.585 kb on - strand, within Rru_A0721 at 850.344 kb on - strand, within Rru_A0722 at 850.368 kb on - strand, within Rru_A0722 at 850.505 kb on - strand, within Rru_A0722 at 850.505 kb on - strand, within Rru_A0722 at 850.804 kb on + strand at 850.804 kb on + strand at 850.804 kb on + strand at 850.805 kb on - strand at 850.848 kb on + strand at 850.848 kb on + strand at 850.848 kb on + strand at 850.848 kb on + strand at 850.848 kb on + strand at 850.862 kb on + strand at 850.862 kb on + strand at 850.904 kb on + strand at 850.915 kb on + strand at 850.915 kb on + strand at 850.916 kb on - strand at 851.031 kb on + strand at 851.031 kb on + strand at 851.031 kb on + strand at 851.031 kb on + strand at 851.032 kb on - strand at 851.061 kb on - strand, within Rru_A0723
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 848,861 + +0.3 848,862 - -1.0 848,862 - -1.0 848,862 - +0.4 849,060 - Rru_A0720 0.44 -1.0 849,061 + Rru_A0720 0.44 +0.2 849,062 - Rru_A0720 0.45 +0.8 849,089 + Rru_A0720 0.50 -0.3 849,091 + Rru_A0720 0.51 -0.1 849,091 + Rru_A0720 0.51 -0.4 849,091 + Rru_A0720 0.51 +1.6 849,091 + Rru_A0720 0.51 -0.8 849,092 - Rru_A0720 0.51 -0.0 849,092 - Rru_A0720 0.51 +0.6 849,092 - Rru_A0720 0.51 -0.4 849,092 - Rru_A0720 0.51 -0.0 849,092 - Rru_A0720 0.51 -0.0 849,112 + Rru_A0720 0.55 -0.0 849,112 + Rru_A0720 0.55 -0.4 849,112 + Rru_A0720 0.55 -0.7 849,113 - Rru_A0720 0.55 +0.6 849,113 - Rru_A0720 0.55 +0.9 849,113 - Rru_A0720 0.55 -0.1 849,115 + Rru_A0720 0.55 -0.0 849,165 - Rru_A0720 0.65 +0.8 849,194 + Rru_A0720 0.71 -0.2 849,194 + Rru_A0720 0.71 -1.6 849,195 - Rru_A0720 0.72 -1.0 849,195 - Rru_A0720 0.72 +0.3 849,195 - Rru_A0720 0.72 -0.4 849,284 - Rru_A0720 0.89 -0.2 849,300 + -0.2 849,300 + -0.5 849,383 + -0.0 849,389 + -0.0 849,389 + -0.0 849,389 + -1.0 849,390 - -1.0 849,434 + +1.0 849,584 + Rru_A0721 0.29 +0.2 849,584 + Rru_A0721 0.29 -1.6 849,584 + Rru_A0721 0.29 -1.0 849,584 + Rru_A0721 0.29 -0.0 849,584 + Rru_A0721 0.29 -0.0 849,584 + Rru_A0721 0.29 -0.0 849,585 - Rru_A0721 0.29 +0.1 849,585 - Rru_A0721 0.29 -0.0 849,585 - Rru_A0721 0.29 -0.0 849,585 - Rru_A0721 0.29 -2.0 849,585 - Rru_A0721 0.29 -1.6 849,585 - Rru_A0721 0.29 +1.2 849,585 - Rru_A0721 0.29 -1.6 850,344 - Rru_A0722 0.46 +0.7 850,368 - Rru_A0722 0.50 -0.0 850,505 - Rru_A0722 0.72 +0.3 850,505 - Rru_A0722 0.72 +0.1 850,804 + -0.0 850,804 + -0.0 850,804 + -0.0 850,805 - +0.6 850,848 + -1.3 850,848 + -1.4 850,848 + -2.0 850,848 + +0.4 850,848 + -0.0 850,862 + -1.0 850,862 + -1.4 850,904 + -0.0 850,915 + +0.9 850,915 + +0.6 850,916 - +0.9 851,031 + +0.5 851,031 + -0.0 851,031 + +0.4 851,031 + -0.3 851,032 - -0.0 851,061 - Rru_A0723 0.11 +0.2
Or see this region's nucleotide sequence