Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0697 and Rru_A0698 are separated by 118 nucleotides Rru_A0698 and Rru_A0699 are separated by 398 nucleotides Rru_A0699 and Rru_A0700 are separated by 8 nucleotides
Rru_A0697: Rru_A0697 - Multi antimicrobial extrusion protein MatE (NCBI), at 826,246 to 827,652
_A0697
Rru_A0698: Rru_A0698 - Lipolytic enzyme (NCBI), at 827,771 to 828,802
_A0698
Rru_A0699: Rru_A0699 - Plasmid stabilization system (NCBI), at 829,201 to 829,515
_A0699
Rru_A0700: Rru_A0700 - Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain (NCBI), at 829,524 to 829,766
_A0700
Position (kb) 827
828
829 Strain fitness (log2 ratio) -1
0
1
2 at 826.945 kb on + strand, within Rru_A0697 at 827.483 kb on - strand, within Rru_A0697 at 827.721 kb on - strand at 827.721 kb on - strand at 827.725 kb on - strand at 828.103 kb on - strand, within Rru_A0698 at 828.460 kb on - strand, within Rru_A0698 at 828.478 kb on - strand, within Rru_A0698 at 828.606 kb on + strand, within Rru_A0698 at 828.606 kb on + strand, within Rru_A0698 at 828.606 kb on + strand, within Rru_A0698 at 828.974 kb on - strand at 829.041 kb on + strand at 829.042 kb on - strand at 829.042 kb on - strand at 829.042 kb on - strand at 829.217 kb on + strand at 829.217 kb on + strand at 829.218 kb on - strand at 829.220 kb on + strand at 829.220 kb on + strand at 829.221 kb on - strand at 829.221 kb on - strand at 829.221 kb on - strand at 829.261 kb on + strand, within Rru_A0699 at 829.262 kb on - strand, within Rru_A0699 at 829.262 kb on - strand, within Rru_A0699 at 829.272 kb on + strand, within Rru_A0699 at 829.273 kb on - strand, within Rru_A0699 at 829.302 kb on - strand, within Rru_A0699 at 829.419 kb on - strand, within Rru_A0699 at 829.421 kb on + strand, within Rru_A0699 at 829.421 kb on + strand, within Rru_A0699 at 829.421 kb on + strand, within Rru_A0699 at 829.421 kb on + strand, within Rru_A0699 at 829.421 kb on + strand, within Rru_A0699 at 829.421 kb on + strand, within Rru_A0699 at 829.421 kb on + strand, within Rru_A0699 at 829.460 kb on + strand, within Rru_A0699 at 829.460 kb on + strand, within Rru_A0699 at 829.460 kb on + strand, within Rru_A0699 at 829.461 kb on - strand, within Rru_A0699 at 829.461 kb on - strand, within Rru_A0699 at 829.461 kb on - strand, within Rru_A0699 at 829.729 kb on + strand, within Rru_A0700 at 829.783 kb on + strand at 829.784 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 826,945 + Rru_A0697 0.50 -1.0 827,483 - Rru_A0697 0.88 +0.6 827,721 - -0.0 827,721 - +0.4 827,725 - -0.0 828,103 - Rru_A0698 0.32 +0.8 828,460 - Rru_A0698 0.67 +2.0 828,478 - Rru_A0698 0.69 -0.0 828,606 + Rru_A0698 0.81 -0.0 828,606 + Rru_A0698 0.81 +0.6 828,606 + Rru_A0698 0.81 +0.1 828,974 - -1.3 829,041 + -1.0 829,042 - +0.2 829,042 - +0.4 829,042 - +0.5 829,217 + +0.5 829,217 + -0.0 829,218 - -0.0 829,220 + +0.4 829,220 + -0.0 829,221 - -0.7 829,221 - -1.0 829,221 - -0.0 829,261 + Rru_A0699 0.19 -0.5 829,262 - Rru_A0699 0.19 -0.0 829,262 - Rru_A0699 0.19 +0.3 829,272 + Rru_A0699 0.23 -0.5 829,273 - Rru_A0699 0.23 -1.0 829,302 - Rru_A0699 0.32 -0.4 829,419 - Rru_A0699 0.69 -0.0 829,421 + Rru_A0699 0.70 -0.2 829,421 + Rru_A0699 0.70 -0.0 829,421 + Rru_A0699 0.70 -0.0 829,421 + Rru_A0699 0.70 +1.2 829,421 + Rru_A0699 0.70 -0.0 829,421 + Rru_A0699 0.70 -1.0 829,421 + Rru_A0699 0.70 +0.4 829,460 + Rru_A0699 0.82 -0.4 829,460 + Rru_A0699 0.82 -0.0 829,460 + Rru_A0699 0.82 -0.1 829,461 - Rru_A0699 0.83 -1.0 829,461 - Rru_A0699 0.83 -0.0 829,461 - Rru_A0699 0.83 -0.2 829,729 + Rru_A0700 0.84 -1.0 829,783 + -0.0 829,784 - +0.6
Or see this region's nucleotide sequence