Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0693 and Rru_A0694 overlap by 8 nucleotides Rru_A0694 and Rru_A0695 are separated by 429 nucleotides Rru_A0695 and Rru_A0696 are separated by 4 nucleotides Rru_A0696 and Rru_A0697 overlap by 4 nucleotides
Rru_A0693: Rru_A0693 - Signal Transduction Histidine Kinase (NCBI), at 821,736 to 822,938
_A0693
Rru_A0694: Rru_A0694 - Response regulator receiver (CheY) and unknown domain protein (NCBI), at 822,931 to 823,374
_A0694
Rru_A0695: Rru_A0695 - 2-isopropylmalate synthase/homocitrate synthase (NCBI), at 823,804 to 825,405
_A0695
Rru_A0696: Rru_A0696 - RNA methyltransferase TrmH, group 1 (NCBI), at 825,410 to 826,249
_A0696
Rru_A0697: Rru_A0697 - Multi antimicrobial extrusion protein MatE (NCBI), at 826,246 to 827,652
_A0697
Position (kb) 823
824
825
826 Strain fitness (log2 ratio) -2
-1
0
1 at 822.905 kb on + strand at 822.905 kb on + strand at 822.905 kb on + strand at 822.906 kb on - strand at 823.139 kb on + strand, within Rru_A0694 at 823.140 kb on - strand, within Rru_A0694 at 823.140 kb on - strand, within Rru_A0694 at 823.140 kb on - strand, within Rru_A0694 at 823.202 kb on + strand, within Rru_A0694 at 823.202 kb on + strand, within Rru_A0694 at 823.298 kb on + strand, within Rru_A0694 at 823.298 kb on + strand, within Rru_A0694 at 823.298 kb on + strand, within Rru_A0694 at 823.299 kb on - strand, within Rru_A0694 at 823.299 kb on - strand, within Rru_A0694 at 823.342 kb on + strand at 823.343 kb on - strand at 823.374 kb on + strand at 823.375 kb on - strand at 823.497 kb on + strand at 823.498 kb on - strand at 823.498 kb on - strand at 823.502 kb on - strand at 823.502 kb on - strand at 823.511 kb on - strand at 823.523 kb on - strand at 823.608 kb on + strand at 823.608 kb on + strand at 823.822 kb on + strand at 823.823 kb on - strand at 823.828 kb on + strand at 823.828 kb on + strand at 823.930 kb on + strand at 823.930 kb on + strand at 823.930 kb on + strand at 823.931 kb on - strand at 823.931 kb on - strand at 824.254 kb on + strand, within Rru_A0695 at 824.256 kb on + strand, within Rru_A0695 at 824.257 kb on - strand, within Rru_A0695 at 824.279 kb on + strand, within Rru_A0695 at 824.279 kb on + strand, within Rru_A0695 at 824.300 kb on - strand, within Rru_A0695 at 824.300 kb on - strand, within Rru_A0695 at 824.455 kb on - strand, within Rru_A0695 at 824.455 kb on - strand, within Rru_A0695 at 824.455 kb on - strand, within Rru_A0695 at 824.747 kb on - strand, within Rru_A0695 at 824.755 kb on - strand, within Rru_A0695 at 824.926 kb on + strand, within Rru_A0695 at 825.100 kb on + strand, within Rru_A0695 at 825.100 kb on + strand, within Rru_A0695 at 825.100 kb on + strand, within Rru_A0695 at 825.100 kb on + strand, within Rru_A0695 at 825.101 kb on - strand, within Rru_A0695 at 825.101 kb on - strand, within Rru_A0695 at 825.102 kb on + strand, within Rru_A0695 at 825.175 kb on + strand, within Rru_A0695 at 825.208 kb on + strand, within Rru_A0695 at 825.219 kb on + strand, within Rru_A0695 at 825.322 kb on - strand at 825.337 kb on + strand at 825.337 kb on + strand at 825.337 kb on + strand at 825.337 kb on + strand at 825.338 kb on - strand at 825.340 kb on - strand at 825.340 kb on - strand at 825.364 kb on + strand at 825.364 kb on + strand at 825.364 kb on + strand at 825.365 kb on - strand at 825.366 kb on + strand at 825.366 kb on + strand at 825.367 kb on - strand at 825.407 kb on - strand at 825.872 kb on + strand, within Rru_A0696 at 825.923 kb on + strand, within Rru_A0696
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 822,905 + -0.0 822,905 + -0.0 822,905 + -0.1 822,906 - -0.0 823,139 + Rru_A0694 0.47 -0.0 823,140 - Rru_A0694 0.47 -1.0 823,140 - Rru_A0694 0.47 -0.0 823,140 - Rru_A0694 0.47 -1.0 823,202 + Rru_A0694 0.61 +0.5 823,202 + Rru_A0694 0.61 +1.0 823,298 + Rru_A0694 0.83 -0.0 823,298 + Rru_A0694 0.83 +0.1 823,298 + Rru_A0694 0.83 -0.8 823,299 - Rru_A0694 0.83 -0.0 823,299 - Rru_A0694 0.83 -0.0 823,342 + +0.5 823,343 - +0.9 823,374 + +0.3 823,375 - +1.0 823,497 + -0.0 823,498 - -0.1 823,498 - -0.2 823,502 - -0.0 823,502 - +0.7 823,511 - -0.0 823,523 - +0.3 823,608 + -1.6 823,608 + -0.0 823,822 + -0.0 823,823 - +0.7 823,828 + -1.0 823,828 + -0.8 823,930 + -0.2 823,930 + -0.4 823,930 + -0.0 823,931 - -1.2 823,931 - -1.4 824,254 + Rru_A0695 0.28 -0.0 824,256 + Rru_A0695 0.28 -0.8 824,257 - Rru_A0695 0.28 -0.0 824,279 + Rru_A0695 0.30 -0.0 824,279 + Rru_A0695 0.30 -0.0 824,300 - Rru_A0695 0.31 -1.0 824,300 - Rru_A0695 0.31 +0.1 824,455 - Rru_A0695 0.41 -0.0 824,455 - Rru_A0695 0.41 +0.6 824,455 - Rru_A0695 0.41 -0.0 824,747 - Rru_A0695 0.59 -0.5 824,755 - Rru_A0695 0.59 -0.0 824,926 + Rru_A0695 0.70 -0.0 825,100 + Rru_A0695 0.81 -0.0 825,100 + Rru_A0695 0.81 -0.0 825,100 + Rru_A0695 0.81 -0.0 825,100 + Rru_A0695 0.81 -1.6 825,101 - Rru_A0695 0.81 -0.0 825,101 - Rru_A0695 0.81 -0.0 825,102 + Rru_A0695 0.81 +0.4 825,175 + Rru_A0695 0.86 -0.2 825,208 + Rru_A0695 0.88 -0.0 825,219 + Rru_A0695 0.88 -0.5 825,322 - -1.8 825,337 + -0.0 825,337 + -1.6 825,337 + -0.0 825,337 + -0.0 825,338 - -0.9 825,340 - -1.0 825,340 - -0.0 825,364 + -0.8 825,364 + -0.8 825,364 + -0.3 825,365 - -1.6 825,366 + +0.5 825,366 + +0.2 825,367 - -2.0 825,407 - -0.0 825,872 + Rru_A0696 0.55 -0.0 825,923 + Rru_A0696 0.61 -0.0
Or see this region's nucleotide sequence