Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0685

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0684 and Rru_A0685 are separated by 140 nucleotidesRru_A0685 and Rru_A0686 are separated by 83 nucleotides Rru_A0684: Rru_A0684 - hypothetical protein (NCBI), at 807,839 to 809,071 _A0684 Rru_A0685: Rru_A0685 - Protein of unknown function DUF81 (NCBI), at 809,212 to 809,982 _A0685 Rru_A0686: Rru_A0686 - Transcriptional Regulator, LysR family (NCBI), at 810,066 to 810,950 _A0686 Position (kb) 809 810Strain fitness (log2 ratio) -1 0 1at 809.035 kb on + strandat 809.035 kb on + strandat 809.214 kb on - strandat 809.311 kb on - strand, within Rru_A0685at 809.504 kb on + strand, within Rru_A0685at 809.505 kb on - strand, within Rru_A0685at 809.636 kb on + strand, within Rru_A0685at 809.636 kb on + strand, within Rru_A0685at 809.636 kb on + strand, within Rru_A0685at 809.637 kb on - strand, within Rru_A0685at 809.637 kb on - strand, within Rru_A0685at 809.637 kb on - strand, within Rru_A0685at 809.645 kb on + strand, within Rru_A0685at 809.646 kb on - strand, within Rru_A0685at 809.694 kb on + strand, within Rru_A0685at 809.694 kb on + strand, within Rru_A0685at 809.815 kb on - strand, within Rru_A0685at 809.815 kb on - strand, within Rru_A0685at 810.679 kb on - strand, within Rru_A0686at 810.679 kb on - strand, within Rru_A0686

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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809,035 + +0.8
809,035 + +0.7
809,214 - +0.7
809,311 - Rru_A0685 0.13 -0.0
809,504 + Rru_A0685 0.38 +1.4
809,505 - Rru_A0685 0.38 -0.0
809,636 + Rru_A0685 0.55 +1.0
809,636 + Rru_A0685 0.55 +0.7
809,636 + Rru_A0685 0.55 +0.6
809,637 - Rru_A0685 0.55 -0.1
809,637 - Rru_A0685 0.55 +0.8
809,637 - Rru_A0685 0.55 -0.0
809,645 + Rru_A0685 0.56 +1.1
809,646 - Rru_A0685 0.56 +0.5
809,694 + Rru_A0685 0.63 -0.0
809,694 + Rru_A0685 0.63 -0.0
809,815 - Rru_A0685 0.78 +0.2
809,815 - Rru_A0685 0.78 +0.6
810,679 - Rru_A0686 0.69 -0.0
810,679 - Rru_A0686 0.69 -0.0

Or see this region's nucleotide sequence