Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0678 and Rru_A0679 are separated by 229 nucleotides Rru_A0679 and Rru_A0680 are separated by 95 nucleotides Rru_A0680 and Rru_A0681 are separated by 201 nucleotides
Rru_A0678: Rru_A0678 - Multi antimicrobial extrusion protein MatE (NCBI), at 800,799 to 802,190
_A0678
Rru_A0679: Rru_A0679 - Transcriptional Regulator, TetR family (NCBI), at 802,420 to 803,043
_A0679
Rru_A0680: Rru_A0680 - hypothetical protein (NCBI), at 803,139 to 803,831
_A0680
Rru_A0681: Rru_A0681 - hypothetical protein (NCBI), at 804,033 to 804,701
_A0681
Position (kb) 803
804 Strain fitness (log2 ratio) -1
0
1
2 at 802.160 kb on + strand at 802.344 kb on + strand at 802.344 kb on + strand at 802.345 kb on - strand at 802.345 kb on - strand at 802.372 kb on + strand at 802.373 kb on - strand at 802.373 kb on - strand at 802.381 kb on - strand at 802.450 kb on + strand at 802.663 kb on - strand, within Rru_A0679 at 802.664 kb on + strand, within Rru_A0679 at 802.665 kb on - strand, within Rru_A0679 at 802.756 kb on - strand, within Rru_A0679 at 802.761 kb on - strand, within Rru_A0679 at 802.767 kb on + strand, within Rru_A0679 at 802.768 kb on - strand, within Rru_A0679 at 802.768 kb on - strand, within Rru_A0679 at 802.768 kb on - strand, within Rru_A0679 at 802.829 kb on - strand, within Rru_A0679 at 803.153 kb on - strand at 803.409 kb on + strand, within Rru_A0680 at 803.410 kb on - strand, within Rru_A0680 at 803.514 kb on + strand, within Rru_A0680 at 803.515 kb on - strand, within Rru_A0680 at 803.515 kb on - strand, within Rru_A0680 at 803.773 kb on + strand at 803.784 kb on + strand at 803.784 kb on + strand at 803.785 kb on - strand at 803.785 kb on - strand at 803.879 kb on - strand at 803.898 kb on + strand at 803.898 kb on + strand at 803.899 kb on - strand at 803.899 kb on - strand at 803.899 kb on - strand at 803.899 kb on - strand at 803.899 kb on - strand at 803.904 kb on + strand at 803.904 kb on + strand at 803.919 kb on + strand at 803.920 kb on - strand at 804.010 kb on + strand at 804.010 kb on + strand at 804.311 kb on + strand, within Rru_A0681 at 804.311 kb on + strand, within Rru_A0681 at 804.311 kb on + strand, within Rru_A0681 at 804.311 kb on + strand, within Rru_A0681 at 804.312 kb on - strand, within Rru_A0681 at 804.312 kb on - strand, within Rru_A0681 at 804.312 kb on - strand, within Rru_A0681 at 804.693 kb on + strand at 804.695 kb on + strand at 804.695 kb on + strand at 804.695 kb on + strand at 804.695 kb on + strand at 804.696 kb on - strand at 804.758 kb on + strand at 804.799 kb on + strand at 804.799 kb on + strand at 804.800 kb on - strand at 804.800 kb on - strand at 804.800 kb on - strand at 804.818 kb on + strand at 804.818 kb on + strand at 804.819 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 802,160 + +1.0 802,344 + +0.5 802,344 + -0.0 802,345 - +0.7 802,345 - +0.4 802,372 + -1.2 802,373 - +1.0 802,373 - -0.0 802,381 - +1.2 802,450 + +0.7 802,663 - Rru_A0679 0.39 +1.5 802,664 + Rru_A0679 0.39 +0.7 802,665 - Rru_A0679 0.39 +1.1 802,756 - Rru_A0679 0.54 -0.0 802,761 - Rru_A0679 0.55 +1.5 802,767 + Rru_A0679 0.56 -0.2 802,768 - Rru_A0679 0.56 +1.1 802,768 - Rru_A0679 0.56 +1.5 802,768 - Rru_A0679 0.56 -0.0 802,829 - Rru_A0679 0.66 +1.0 803,153 - -1.0 803,409 + Rru_A0680 0.39 -0.0 803,410 - Rru_A0680 0.39 +1.3 803,514 + Rru_A0680 0.54 +0.6 803,515 - Rru_A0680 0.54 -1.0 803,515 - Rru_A0680 0.54 -0.0 803,773 + -0.0 803,784 + -0.0 803,784 + +1.4 803,785 - -0.0 803,785 - +1.3 803,879 - -1.0 803,898 + +1.3 803,898 + +1.5 803,899 - +0.5 803,899 - -0.0 803,899 - -1.0 803,899 - +0.4 803,899 - +0.2 803,904 + +1.2 803,904 + -0.0 803,919 + +2.3 803,920 - +0.8 804,010 + +1.2 804,010 + +1.6 804,311 + Rru_A0681 0.42 +1.2 804,311 + Rru_A0681 0.42 +1.7 804,311 + Rru_A0681 0.42 +0.7 804,311 + Rru_A0681 0.42 -0.0 804,312 - Rru_A0681 0.42 -0.0 804,312 - Rru_A0681 0.42 +0.8 804,312 - Rru_A0681 0.42 -0.0 804,693 + +1.3 804,695 + +2.0 804,695 + +0.8 804,695 + +1.7 804,695 + +1.4 804,696 - -0.0 804,758 + +1.1 804,799 + +0.9 804,799 + +0.5 804,800 - -0.0 804,800 - -0.0 804,800 - -0.0 804,818 + +1.7 804,818 + +1.4 804,819 - -0.0
Or see this region's nucleotide sequence