Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0678

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0676 and Rru_A0677 are separated by 120 nucleotidesRru_A0677 and Rru_A0678 overlap by 4 nucleotidesRru_A0678 and Rru_A0679 are separated by 229 nucleotidesRru_A0679 and Rru_A0680 are separated by 95 nucleotides Rru_A0676: Rru_A0676 - Transposase IS116/IS110/IS902 (NCBI), at 799,105 to 800,136 _A0676 Rru_A0677: Rru_A0677 - hypothetical protein (NCBI), at 800,257 to 800,802 _A0677 Rru_A0678: Rru_A0678 - Multi antimicrobial extrusion protein MatE (NCBI), at 800,799 to 802,190 _A0678 Rru_A0679: Rru_A0679 - Transcriptional Regulator, TetR family (NCBI), at 802,420 to 803,043 _A0679 Rru_A0680: Rru_A0680 - hypothetical protein (NCBI), at 803,139 to 803,831 _A0680 Position (kb) 800 801 802 803Strain fitness (log2 ratio) -2 -1 0 1 2at 800.275 kb on - strandat 800.275 kb on - strandat 800.275 kb on - strandat 800.275 kb on - strandat 800.364 kb on + strand, within Rru_A0677at 800.404 kb on + strand, within Rru_A0677at 800.404 kb on + strand, within Rru_A0677at 800.404 kb on + strand, within Rru_A0677at 800.405 kb on - strand, within Rru_A0677at 800.427 kb on + strand, within Rru_A0677at 800.428 kb on - strand, within Rru_A0677at 800.572 kb on + strand, within Rru_A0677at 800.572 kb on + strand, within Rru_A0677at 800.573 kb on - strand, within Rru_A0677at 800.573 kb on - strand, within Rru_A0677at 800.573 kb on - strand, within Rru_A0677at 800.949 kb on + strand, within Rru_A0678at 800.950 kb on - strand, within Rru_A0678at 801.028 kb on + strand, within Rru_A0678at 801.029 kb on - strand, within Rru_A0678at 801.029 kb on - strand, within Rru_A0678at 801.029 kb on - strand, within Rru_A0678at 801.029 kb on - strand, within Rru_A0678at 801.029 kb on - strand, within Rru_A0678at 801.029 kb on - strand, within Rru_A0678at 801.029 kb on - strand, within Rru_A0678at 801.029 kb on - strand, within Rru_A0678at 801.029 kb on - strand, within Rru_A0678at 801.030 kb on + strand, within Rru_A0678at 801.030 kb on + strand, within Rru_A0678at 801.030 kb on + strand, within Rru_A0678at 801.065 kb on - strand, within Rru_A0678at 801.077 kb on + strand, within Rru_A0678at 801.077 kb on + strand, within Rru_A0678at 801.078 kb on - strand, within Rru_A0678at 801.087 kb on + strand, within Rru_A0678at 801.263 kb on + strand, within Rru_A0678at 801.315 kb on + strand, within Rru_A0678at 801.315 kb on + strand, within Rru_A0678at 801.337 kb on + strand, within Rru_A0678at 801.337 kb on + strand, within Rru_A0678at 801.337 kb on + strand, within Rru_A0678at 801.338 kb on - strand, within Rru_A0678at 801.356 kb on + strand, within Rru_A0678at 801.358 kb on + strand, within Rru_A0678at 801.358 kb on + strand, within Rru_A0678at 801.358 kb on + strand, within Rru_A0678at 801.359 kb on - strand, within Rru_A0678at 801.359 kb on - strand, within Rru_A0678at 801.359 kb on - strand, within Rru_A0678at 801.359 kb on - strand, within Rru_A0678at 801.508 kb on - strand, within Rru_A0678at 801.521 kb on + strand, within Rru_A0678at 801.521 kb on + strand, within Rru_A0678at 801.521 kb on + strand, within Rru_A0678at 801.521 kb on + strand, within Rru_A0678at 801.522 kb on - strand, within Rru_A0678at 801.522 kb on - strand, within Rru_A0678at 801.764 kb on - strand, within Rru_A0678at 801.806 kb on + strand, within Rru_A0678at 801.807 kb on - strand, within Rru_A0678at 801.807 kb on - strand, within Rru_A0678at 801.840 kb on + strand, within Rru_A0678at 801.841 kb on - strand, within Rru_A0678at 801.928 kb on - strand, within Rru_A0678at 801.993 kb on - strand, within Rru_A0678at 802.073 kb on + strandat 802.073 kb on + strandat 802.073 kb on + strandat 802.073 kb on + strandat 802.074 kb on - strandat 802.074 kb on - strandat 802.074 kb on - strandat 802.106 kb on + strandat 802.106 kb on + strandat 802.106 kb on + strandat 802.107 kb on - strandat 802.107 kb on - strandat 802.160 kb on + strandat 802.344 kb on + strandat 802.344 kb on + strandat 802.345 kb on - strandat 802.345 kb on - strandat 802.372 kb on + strandat 802.373 kb on - strandat 802.373 kb on - strandat 802.381 kb on - strandat 802.450 kb on + strandat 802.663 kb on - strand, within Rru_A0679at 802.664 kb on + strand, within Rru_A0679at 802.665 kb on - strand, within Rru_A0679at 802.756 kb on - strand, within Rru_A0679at 802.761 kb on - strand, within Rru_A0679at 802.767 kb on + strand, within Rru_A0679at 802.768 kb on - strand, within Rru_A0679at 802.768 kb on - strand, within Rru_A0679at 802.768 kb on - strand, within Rru_A0679at 802.829 kb on - strand, within Rru_A0679at 803.153 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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800,275 - +1.9
800,275 - +0.3
800,275 - -0.2
800,275 - -0.2
800,364 + Rru_A0677 0.20 +0.8
800,404 + Rru_A0677 0.27 -0.0
800,404 + Rru_A0677 0.27 -0.0
800,404 + Rru_A0677 0.27 +0.5
800,405 - Rru_A0677 0.27 +1.1
800,427 + Rru_A0677 0.31 -0.0
800,428 - Rru_A0677 0.31 +1.1
800,572 + Rru_A0677 0.58 +0.1
800,572 + Rru_A0677 0.58 +0.9
800,573 - Rru_A0677 0.58 +0.8
800,573 - Rru_A0677 0.58 -0.0
800,573 - Rru_A0677 0.58 -0.0
800,949 + Rru_A0678 0.11 -0.4
800,950 - Rru_A0678 0.11 -0.2
801,028 + Rru_A0678 0.16 -0.5
801,029 - Rru_A0678 0.17 +1.9
801,029 - Rru_A0678 0.17 -0.6
801,029 - Rru_A0678 0.17 +0.4
801,029 - Rru_A0678 0.17 -0.0
801,029 - Rru_A0678 0.17 -0.3
801,029 - Rru_A0678 0.17 +0.4
801,029 - Rru_A0678 0.17 +0.0
801,029 - Rru_A0678 0.17 +0.2
801,029 - Rru_A0678 0.17 -0.5
801,030 + Rru_A0678 0.17 -0.0
801,030 + Rru_A0678 0.17 -0.0
801,030 + Rru_A0678 0.17 -0.0
801,065 - Rru_A0678 0.19 -0.0
801,077 + Rru_A0678 0.20 -0.0
801,077 + Rru_A0678 0.20 -0.0
801,078 - Rru_A0678 0.20 +1.4
801,087 + Rru_A0678 0.21 +1.7
801,263 + Rru_A0678 0.33 -0.0
801,315 + Rru_A0678 0.37 -0.4
801,315 + Rru_A0678 0.37 -0.0
801,337 + Rru_A0678 0.39 -0.0
801,337 + Rru_A0678 0.39 -0.0
801,337 + Rru_A0678 0.39 +0.5
801,338 - Rru_A0678 0.39 +0.2
801,356 + Rru_A0678 0.40 -0.0
801,358 + Rru_A0678 0.40 +0.3
801,358 + Rru_A0678 0.40 +2.7
801,358 + Rru_A0678 0.40 -0.0
801,359 - Rru_A0678 0.40 +0.1
801,359 - Rru_A0678 0.40 +1.3
801,359 - Rru_A0678 0.40 -1.4
801,359 - Rru_A0678 0.40 -0.2
801,508 - Rru_A0678 0.51 +0.6
801,521 + Rru_A0678 0.52 -0.0
801,521 + Rru_A0678 0.52 -2.3
801,521 + Rru_A0678 0.52 +0.2
801,521 + Rru_A0678 0.52 +0.1
801,522 - Rru_A0678 0.52 +1.3
801,522 - Rru_A0678 0.52 -0.4
801,764 - Rru_A0678 0.69 -0.0
801,806 + Rru_A0678 0.72 -0.0
801,807 - Rru_A0678 0.72 -0.0
801,807 - Rru_A0678 0.72 +0.3
801,840 + Rru_A0678 0.75 +0.5
801,841 - Rru_A0678 0.75 -0.0
801,928 - Rru_A0678 0.81 -0.3
801,993 - Rru_A0678 0.86 -1.0
802,073 + +1.1
802,073 + +0.3
802,073 + +1.6
802,073 + -0.0
802,074 - +0.2
802,074 - +0.4
802,074 - +0.1
802,106 + +0.7
802,106 + +0.6
802,106 + +0.5
802,107 - +0.2
802,107 - +0.4
802,160 + +1.0
802,344 + +0.5
802,344 + -0.0
802,345 - +0.7
802,345 - +0.4
802,372 + -1.2
802,373 - +1.0
802,373 - -0.0
802,381 - +1.2
802,450 + +0.7
802,663 - Rru_A0679 0.39 +1.5
802,664 + Rru_A0679 0.39 +0.7
802,665 - Rru_A0679 0.39 +1.1
802,756 - Rru_A0679 0.54 -0.0
802,761 - Rru_A0679 0.55 +1.5
802,767 + Rru_A0679 0.56 -0.2
802,768 - Rru_A0679 0.56 +1.1
802,768 - Rru_A0679 0.56 +1.5
802,768 - Rru_A0679 0.56 -0.0
802,829 - Rru_A0679 0.66 +1.0
803,153 - -1.0

Or see this region's nucleotide sequence